View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_40 (Length: 337)
Name: NF19555_low_40
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 10001629 - 10001304
Alignment:
| Q |
1 |
ctcaaatgcacaataacagatatttttgaaaatctagtttaaaagatnnnnnnnnnnttagcaaataaatcataccaatgaagtacttgttcattacttc |
100 |
Q |
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| T |
10001629 |
ctcaaatgaacaataacaaatttttttgaaaatctagtttaaaagataaaaaaaat-ttagcaaataaatcttaccaatgaagtacttgttcattacttc |
10001531 |
T |
|
| Q |
101 |
ggcagaagcaacaccgcgttcaatctgaaccatctgaccaattttctcttccaaagtcatcctgtcgagaagagccttgattcgagtattcaacggctgc |
200 |
Q |
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| T |
10001530 |
ggcagaagcaacaccgcgttcaatctgaaccatctgaccaattttctcttccaaagtcatcctgtcaataagatccttgattcgagtattcaacggctgc |
10001431 |
T |
|
| Q |
201 |
tttgaatctttgtatctcaaatgcttagcttctgccattgctacccaacaatggaagagcactagcccggccaccaaagagattgcacctttgaccattt |
300 |
Q |
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| T |
10001430 |
tttgaatctttgtatctcaaatgctccgcttctgccattgctacccaacaatggaagagcactagcccggccaccaaagagattgcacctttgaccattt |
10001331 |
T |
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| Q |
301 |
ctccctctcaaaacaactacagaataa |
327 |
Q |
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| T |
10001330 |
ctccctctcaaaacaactacagaataa |
10001304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 58 - 327
Target Start/End: Complemental strand, 9995665 - 9995399
Alignment:
| Q |
58 |
ttagcaaataaatcataccaatgaagtacttgttcattacttcggcagaagcaacaccgcgttcaatctgaaccatctgaccaattttctcttccaaagt |
157 |
Q |
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| T |
9995665 |
ttaggaaacaaatcttaccaatgaagtagttgttcattacttcagcagaagcaacattgcgttcaatctgaaccatctgaccaattttctcttccaaagt |
9995566 |
T |
|
| Q |
158 |
catcctgtcgagaagagccttgattcgagtattcaacggctgctttgaatctttgtatctcaaatgcttagcttctgccattgctacccaacaatggaag |
257 |
Q |
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| T |
9995565 |
catcctgtcgagaagatccttgattcgagtattcaatggctgctttgaatctttgtatctcaaatgcttagcttctgccatagctaccaagtagtgcaag |
9995466 |
T |
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| Q |
258 |
agcactagcccggccaccaaagagattgcacctttgaccatttctccctctcaaaacaactacagaataa |
327 |
Q |
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| T |
9995465 |
agcacaagcc---ccaccaaaaacattgtacttttggccatttctacctctcaaaacaacttcaaaataa |
9995399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 84 - 317
Target Start/End: Complemental strand, 9989450 - 9989220
Alignment:
| Q |
84 |
tacttgttcattacttcggcagaagcaacaccgcgttcaatctgaaccatctgaccaattttctcttccaaagtcatcctgtcgagaagagccttgattc |
183 |
Q |
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| T |
9989450 |
tactttttcatcacatcagcggaagcaacgctgcgatcaatctgaaccatctgaccgattttctcttccaaagtcatcctgtcaacaagatccttgattc |
9989351 |
T |
|
| Q |
184 |
gagtattcaacggctgctttgaatctttgtatctcaaatgcttagcttctgccattgctacccaacaatggaagagcactagcccggccaccaaagagat |
283 |
Q |
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| T |
9989350 |
gagtattcaatggctgctttggatctttgtatctcaaatgctcagcttctgccatagctaccaagcagtgcaagagcacaagccc---caccaaaaaatg |
9989254 |
T |
|
| Q |
284 |
tgcacctttgaccatttctccctctcaaaacaac |
317 |
Q |
| |
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|| |||||| |||||||| |||||||||||||| |
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| T |
9989253 |
tgaaccttttgccatttcttcctctcaaaacaac |
9989220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 67 - 315
Target Start/End: Complemental strand, 10011150 - 10010905
Alignment:
| Q |
67 |
aaatcataccaatgaagtacttgttcattacttcggcagaagcaacaccgcgttcaatctgaaccatctgaccaattttctcttccaaagtcatcctgtc |
166 |
Q |
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|||||||||| || || || || ||||| || || |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
10011150 |
aaatcataccgataaaatattttttcatcacatcagcagaagcaacagtgcaatcaatctgaaccatctgaccaattttctcttccaatgtcattctgtc |
10011051 |
T |
|
| Q |
167 |
gagaagagccttgattcgagtattcaacggctgctttgaatctttgtatctcaaatgcttagcttctgccattgctacccaacaatggaagagcactagc |
266 |
Q |
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| |||| ||||||||| ||||||||| |||| |||| |||||||||| | |||| || |||||||||||||| || ||||||||||||||||| |||| |
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| T |
10011050 |
cataagatccttgattctagtattcaatagctgttttggatctttgtatttgaaattctcagcttctgccattgttatccaacaatggaagagcaatagc |
10010951 |
T |
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| Q |
267 |
ccggccaccaaagagattgcacctttgaccatttctccctctcaaaaca |
315 |
Q |
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| T |
10010950 |
c---ccaccaaaaatattgaacattttgccatttcttcctctcaaaaca |
10010905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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