View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_low_42 (Length: 325)

Name: NF19555_low_42
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_low_42
NF19555_low_42
[»] chr8 (14 HSPs)
chr8 (1-309)||(33071995-33072303)
chr8 (1-272)||(42234500-42234774)
chr8 (1-119)||(28644639-28644757)
chr8 (5-172)||(38757072-38757249)
chr8 (1-119)||(30405782-30405900)
chr8 (1-119)||(30410291-30410409)
chr8 (1-77)||(197684-197762)
chr8 (1-77)||(202202-202280)
chr8 (1-77)||(312521-312599)
chr8 (1-77)||(317039-317117)
chr8 (1-77)||(43807485-43807563)
chr8 (1-77)||(43812044-43812122)
chr8 (198-272)||(1286903-1286976)
chr8 (190-272)||(1291603-1291684)
[»] chr4 (17 HSPs)
chr4 (20-271)||(35842843-35843094)
chr4 (1-186)||(10316958-10317143)
chr4 (1-172)||(8892529-8892700)
chr4 (1-134)||(27186223-27186356)
chr4 (5-134)||(50627889-50628018)
chr4 (1-119)||(31670168-31670286)
chr4 (1-185)||(53722084-53722280)
chr4 (15-122)||(43683633-43683740)
chr4 (145-268)||(31354908-31355031)
chr4 (1-77)||(3770921-3770999)
chr4 (1-77)||(44147102-44147180)
chr4 (1-77)||(44151637-44151715)
chr4 (184-272)||(43683480-43683567)
chr4 (221-268)||(31359440-31359487)
chr4 (184-254)||(27186410-27186479)
chr4 (149-198)||(31359393-31359442)
chr4 (184-254)||(50627765-50627835)
[»] chr5 (18 HSPs)
chr5 (5-172)||(36632383-36632550)
chr5 (1-183)||(19502386-19502568)
chr5 (1-172)||(32485894-32486065)
chr5 (1-133)||(26336753-26336885)
chr5 (1-120)||(30695370-30695489)
chr5 (1-139)||(20830271-20830408)
chr5 (1-99)||(43385029-43385127)
chr5 (5-122)||(40367570-40367688)
chr5 (1-77)||(7099374-7099452)
chr5 (1-77)||(7103943-7104021)
chr5 (1-77)||(12018810-12018888)
chr5 (1-77)||(12023368-12023446)
chr5 (1-77)||(16794187-16794265)
chr5 (1-77)||(16798748-16798826)
chr5 (1-66)||(40371750-40371815)
chr5 (15-77)||(37658814-37658878)
chr5 (15-77)||(37682118-37682182)
chr5 (1-46)||(20808675-20808720)
[»] chr7 (12 HSPs)
chr7 (5-172)||(7466432-7466599)
chr7 (1-119)||(22901233-22901351)
chr7 (1-120)||(47419539-47419658)
chr7 (1-122)||(733625-733746)
chr7 (5-142)||(35705716-35705853)
chr7 (1-119)||(27756923-27757041)
chr7 (1-119)||(27761474-27761592)
chr7 (1-77)||(7940083-7940161)
chr7 (1-77)||(7944636-7944714)
chr7 (127-172)||(30429979-30430024)
chr7 (184-254)||(733492-733561)
chr7 (2-96)||(13828087-13828181)
[»] chr1 (8 HSPs)
chr1 (1-172)||(43591730-43591901)
chr1 (1-172)||(39793908-39794091)
chr1 (1-119)||(16588440-16588558)
chr1 (5-119)||(26311591-26311705)
chr1 (5-119)||(26316082-26316196)
chr1 (184-254)||(10504698-10504768)
chr1 (184-254)||(3742745-3742814)
chr1 (127-185)||(16588361-16588419)
[»] chr6 (10 HSPs)
chr6 (2-183)||(17895621-17895802)
chr6 (1-172)||(14531696-14531867)
chr6 (15-183)||(17886746-17886914)
chr6 (1-185)||(17096158-17096354)
chr6 (1-172)||(8315400-8315583)
chr6 (1-172)||(8319939-8320122)
chr6 (1-119)||(27552072-27552190)
chr6 (1-120)||(17779992-17780111)
chr6 (15-111)||(27574708-27574804)
chr6 (127-185)||(27551992-27552050)
[»] chr3 (15 HSPs)
chr3 (1-140)||(11004344-11004483)
chr3 (1-134)||(9697665-9697798)
chr3 (1-134)||(43547802-43547935)
chr3 (1-119)||(21847188-21847306)
chr3 (1-119)||(21850278-21850396)
chr3 (1-121)||(9105352-9105472)
chr3 (144-259)||(39398933-39399047)
chr3 (1-119)||(43554646-43554764)
chr3 (127-186)||(1253093-1253152)
chr3 (1-77)||(54171924-54172002)
chr3 (1-77)||(54167344-54167422)
chr3 (184-254)||(9697852-9697921)
chr3 (184-254)||(43547988-43548057)
chr3 (203-256)||(38175598-38175651)
chr3 (184-249)||(43554833-43554897)
[»] chr2 (9 HSPs)
chr2 (1-172)||(12999370-12999544)
chr2 (1-118)||(8055469-8055586)
chr2 (5-119)||(6463400-6463514)
chr2 (1-118)||(8050916-8051033)
chr2 (5-86)||(13270980-13271061)
chr2 (1-77)||(36670582-36670660)
chr2 (1-77)||(36675130-36675208)
chr2 (184-254)||(13270845-13270915)
chr2 (203-254)||(35950263-35950315)
[»] scaffold0440 (2 HSPs)
scaffold0440 (1-77)||(3059-3137)
scaffold0440 (1-77)||(7584-7662)
[»] scaffold0044 (2 HSPs)
scaffold0044 (1-77)||(44865-44943)
scaffold0044 (1-77)||(49445-49523)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 33071995 - 33072303
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  33071995 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagc 33072094  T
Q  101 cacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaattcataaatctgcaa 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33072095 tacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccataattcacaaattcataaatctgcaa 33072194  T
Q  201 atccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagctttgttgtactacgctaacaattacaaccttcctatgaggatgttattg 300  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  33072195 aaccctagaaactacaaatttgcttctgagttcattgcttgttgaacaagctttgttgtactgcgctaacagttacaaccttcctatgaggatgttattg 33072294  T
Q  301 caggaagac 309  Q
    |||||||||    
T  33072295 caggaagac 33072303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 42234774 - 42234500
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42234774 atgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaac 42234675  T
Q  101 cacctcctttgtatattttcattag-catcaata--acaatttca-tcataacttctctcttctctcaattctctccatgattcacaaattcataaatct 196  Q
     |||| |||||||||||||||| ||   ||||||  |||||| || || | | |||| |  ||| ||  |||||||  |   ||   |||||||||||||    
T  42234674 taccttctttgtatattttcataagatttcaataatacaattacattcttcaattctataatctttctcttctctcattctctctataattcataaatct 42234575  T
Q  197 gcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagctttgttgtactacgctaacaa 272  Q
     |||| ||||| |||||||||  |||||||||  ||||||||||||||||||||||||||||| || |||||||||    
T  42234574 acaaa-ccctaaaaactacaaaattgcttctggtttcattgcttgttgaacaagctttgttgtgctgcgctaacaa 42234500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 28644639 - 28644757
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |    
T  28644639 atgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagc 28644738  T
Q  101 cacctcctttgtatatttt 119  Q
     ||||||||||||||||||    
T  28644739 tacctcctttgtatatttt 28644757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 38757072 - 38757249
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc 104  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||| |||||||||| |||| ||| ||||||||||| | |||    
T  38757072 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacc 38757171  T
Q  105 tcctttgtatatttt----------cattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
    |||||||||||||||           | ||| |||||| ||| |||||||||||||||||||||||||||||||||||    
T  38757172 tcctttgtatattttatatgcagaataatagtatcaattacattttcatcataacttctctcttctctcaattctctc 38757249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30405900 - 30405782
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||| |    
T  30405900 atgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatataagc 30405801  T
Q  101 cacctcctttgtatatttt 119  Q
     |||||||||||| |||||    
T  30405800 tacctcctttgtacatttt 30405782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30410409 - 30410291
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||| |    
T  30410409 atgaagtttgttacaagtttgttagaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagc 30410310  T
Q  101 cacctcctttgtatatttt 119  Q
     |||||||||||| |||||    
T  30410309 tacctcctttgtacatttt 30410291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 197762 - 197684
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  197762 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 202280 - 202202
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  202280 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 312599 - 312521
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  312599 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 317117 - 317039
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  317117 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43807563 - 43807485
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  43807563 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43812122 - 43812044
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  43812122 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 1286903 - 1286976
Alignment:
Q  198 caaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagctttgttgtactacgctaacaa 272  Q
    |||| |||||||||||||||  | |||||||| |||||||||||||||||||||||||||||  | |||||||||    
T  1286903 caaaaccctagaaactacaaact-gcttctgatttcattgcttgttgaacaagctttgttgtgttgcgctaacaa 1286976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 1291603 - 1291684
Alignment:
Q  190 taaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagctttgttgtactacgctaacaa 272  Q
    |||| ||||||| |||||||||||||||  | |||| ||| ||||||| |||||||| |||||||||||| || | |||||||    
T  1291603 taaacctgcaaaaccctagaaactacaaact-gcttatgatttcattgtttgttgaataagctttgttgtgctgcactaacaa 1291684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 35842843 - 35843094
Alignment:
Q  20 tgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtatatttt 119  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T
Q  120 cattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaattcataaatctgcaaatccctagaaactacaagt 219  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||| ||||||||| |    
T  35842943 cataagcatcaataacaatttcatcataacttctctcttctctcaattctctctctaattcacaaattcataaatctgcaaaaccctaaaaactacaaat 35843042  T
Q  220 ttgcttctgagttcattgcttgttgaacaagctttgttgtactacgctaaca 271  Q
     ||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  35843043 ctgcttctgagttcattgtttgttgaacaagctttgttgtgctgcgctaaca 35843094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 10317143 - 10316958
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |    
T  10317143 atgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagc 10317044  T
Q  101 cacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaat 186  Q
     ||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||    
T  10317043 tacctcctttgtatattttcataagaattaataacattttcatcataacttctctcttctctcaattctctctataattcacaaat 10316958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 8892700 - 8892529
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    |||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| |    
T  8892700 atgaagtttgttacaaatttgttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagc 8892601  T
Q  101 cacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
     ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  8892600 tacctcctttgtatattttcacaagtatcaataacaatttcatcataacttctctcttctctcaactctctc 8892529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27186223 - 27186356
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |    
T  27186223 atgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagc 27186322  T
Q  101 cacctcctttgtatattttcattagcatcaataa 134  Q
      |||||||||||||||||||| || ||||||||    
T  27186323 tgcctcctttgtatattttcatgagaatcaataa 27186356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 50628018 - 50627889
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc 104  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||    
T  50628018 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacc 50627919  T
Q  105 tcctttgtatattttcattagcatcaataa 134  Q
    |||||| ||||||||||| || ||||||||    
T  50627918 tcctttatatattttcatcagaatcaataa 50627889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 31670168 - 31670286
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |    
T  31670168 atgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagc 31670267  T
Q  101 cacctcctttgtatatttt 119  Q
     ||||||||||||||||||    
T  31670268 tacctcctttgtatatttt 31670286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 53722084 - 53722280
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |    
T  53722084 atgaagtttgttacaagtttgttagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagc 53722183  T
Q  101 cacctcctttgtatattttc------------attagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaa 185  Q
     |||||||||||| ||||||            | ||| |||||||||| |||||||||||||||||||||| ||||||||||||  | |||||||||    
T  53722184 tacctcctttgtacattttcaacacggtgaataatagtatcaataacattttcatcataacttctctcttccctcaattctctctctaattcacaaa 53722280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 43683740 - 43683633
Alignment:
Q  15 aagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtat 114  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||    
T  43683740 aagtttgttagaggttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtat 43683641  T
Q  115 attttcat 122  Q
    ||||||||    
T  43683640 attttcat 43683633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 31354908 - 31355031
Alignment:
Q  145 ataacttctctcttctctcaattctctccatgattcacaaattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttg 244  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||||| |||||| ||||||||||||||| | |||||  |||||||||||||||||    
T  31354908 ataacttctatcttctctcaattctctctataattcacaaattcataaatatgcaaaaccctagaaactacaaatctgcttacgagttcattgcttgttg 31355007  T
Q  245 aacaagctttgttgtactacgcta 268  Q
    |||||||||||||||||| |||||    
T  31355008 aacaagctttgttgtactgcgcta 31355031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3770921 - 3770999
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  3770921 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44147102 - 44147180
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  44147102 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44151637 - 44151715
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  44151637 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 43683567 - 43683480
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagctttgttgtactacgctaacaa 272  Q
    ||||||||||||| |||| |||||||||||| ||  |||||||||  |||||||||||||||||||||||||||||  | |||||||||    
T  43683567 aattcataaatctacaaa-ccctagaaactaaaaaattgcttctggtttcattgcttgttgaacaagctttgttgtgttgcgctaacaa 43683480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 31359440 - 31359487
Alignment:
Q  221 tgcttctgagttcattgcttgttgaacaagctttgttgtactacgcta 268  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||    
T  31359440 tgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgcta 31359487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 27186410 - 27186479
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagcttt 254  Q
    ||||||||||||| || | |||||||||||||||  |||||||||  ||||||||||||||||||||||||    
T  27186410 aattcataaatctacaga-ccctagaaactacaaaattgcttctggtttcattgcttgttgaacaagcttt 27186479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 31359393 - 31359442
Alignment:
Q  149 cttctctcttctctcaattctctccatgattcacaaattcataaatctgc 198  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||    
T  31359393 cttctctcttctctcaattctgtctataattcacaaattcataaatctgc 31359442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 50627835 - 50627765
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagtt-cattgcttgttgaacaagcttt 254  Q
    ||||||||||||| |||| |||||||||||||||  |||||||||  || ||||||||||||||||||||||    
T  50627835 aattcataaatctacaaa-ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagcttt 50627765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 36632383 - 36632550
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc 104  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||    
T  36632383 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacc 36632482  T
Q  105 tcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36632483 tcctttgtatattttcataagcatcaataacaatttcatcataacttctctcttctctcaattctctc 36632550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 19502386 - 19502568
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  19502386 atgaagtttgttacaagtttgttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagc 19502485  T
Q  101 cacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcaca 183  Q
     ||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  19502486 tacctcctttatatattttcataagaatcaataacaatttcatcataacttctctcttctctcaattctctctataattcaca 19502568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 32486065 - 32485894
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||| |    
T  32486065 atgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagc 32485966  T
Q  101 cacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
     ||||||||| |||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  32485965 tacctcctttatatattttcattaaaatcaataacaatttcatcataatttctctcttctctcaattctctc 32485894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 26336885 - 26336753
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  26336885 atgatgtttgttacatgtttgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagc 26336786  T
Q  101 cacctcctttgtatattttcattagcatcaata 133  Q
     |||||||||||||||||||||||| |||||||    
T  26336785 tacctcctttgtatattttcattagaatcaata 26336753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 30695370 - 30695489
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  30695370 atgaagtttgttacaagtttgttagaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 30695469  T
Q  101 cacctcctttgtatattttc 120  Q
     |||||||||||| ||||||    
T  30695470 tacctcctttgtacattttc 30695489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 20830408 - 20830271
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |    
T  20830408 atgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagc 20830309  T
Q  101 cacctcctttgtatattttcattagcatcaataacaatt 139  Q
     |||| | || ||||||||||| || |||||||||||||    
T  20830308 tacctac-ttatatattttcatcagtatcaataacaatt 20830271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 43385029 - 43385127
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaa 99  Q
    ||||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43385029 atgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaa 43385127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 40367688 - 40367570
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagc-aacttagctagacattgtatataaaccac 103  Q
    ||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||| ||||||||||||| ||||| | |||| ||||||||||| | ||    
T  40367688 agtttgttacaagtttgttagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctac 40367589  T
Q  104 ctcctttgtatattttcat 122  Q
    |||||||||| ||||||||    
T  40367588 ctcctttgtacattttcat 40367570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7099452 - 7099374
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  7099452 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7104021 - 7103943
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  7104021 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12018810 - 12018888
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  12018810 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12023368 - 12023446
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  12023368 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16794187 - 16794265
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  16794187 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16798748 - 16798826
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  16798748 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40371815 - 40371750
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtg 66  Q
    |||||| |||||||||||||||| |||| ||| | |||||||||||||||| ||||||||||||||    
T  40371815 atgaagattgttacaagtttgttagaggctagtagataagatctagagtttattacattgtttgtg 40371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 37658814 - 37658878
Alignment:
Q  15 aagtttgttggaggttagcaaataagatc--tagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  37658814 aagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 37682118 - 37682182
Alignment:
Q  15 aagtttgttggaggttagcaaataagatc--tagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  37682118 aagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20808720 - 20808675
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctag 46  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||    
T  20808720 atgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 7466599 - 7466432
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc 104  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  7466599 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacc 7466500  T
Q  105 tcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7466499 tcctttgtatattttcataagtatcaataacaatttcatcataacttctctcttctctcaactctctc 7466432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 22901233 - 22901351
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  22901233 atgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagc 22901332  T
Q  101 cacctcctttgtatatttt 119  Q
     ||||||||||||||||||    
T  22901333 tacctcctttgtatatttt 22901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 47419658 - 47419539
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    |||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  47419658 atgaagtttgttacaagtttcttagaggttagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagc 47419559  T
Q  101 cacctcctttgtatattttc 120  Q
     |||||||||||||||||||    
T  47419558 tacctcctttgtatattttc 47419539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 733746 - 733625
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |    
T  733746 atgaaatttgttacaattttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagc 733647  T
Q  101 cacctcctttgtatattttcat 122  Q
     |||||||||||||| ||||||    
T  733646 tacctcctttgtatactttcat 733625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 35705716 - 35705853
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc 104  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| | |||    
T  35705716 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacc 35705814  T
Q  105 -tcctttgtatattttcattagcatcaataacaatttca 142  Q
     | |||||||||||||||| || ||||||||||| ||||    
T  35705815 tttctttgtatattttcataagtatcaataacaagttca 35705853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 27756923 - 27757041
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  27756923 atgaagtttgttacaagtttgttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 27757022  T
Q  101 cacctcctttgtatatttt 119  Q
     |||||||||||| |||||    
T  27757023 tacctcctttgtacatttt 27757041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 27761474 - 27761592
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  27761474 atgaagtttgttacaagtttgttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 27761573  T
Q  101 cacctcctttgtatatttt 119  Q
     |||||||||||| |||||    
T  27761574 tacctcctttgtacatttt 27761592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7940161 - 7940083
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  7940161 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7944714 - 7944636
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  7944714 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 30429979 - 30430024
Alignment:
Q  127 atcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||    
T  30429979 atcaataacaatttcatcataacttctttcttctttcaattctctc 30430024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 733561 - 733492
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagcttt 254  Q
    ||||||||||||| |||| |||||||||| | ||  |||||||||  ||||||||||||||||||||||||    
T  733561 aattcataaatctacaaa-ccctagaaacaaaaaaattgcttctggtttcattgcttgttgaacaagcttt 733492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 13828181 - 13828087
Alignment:
Q  2 tgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatat 96  Q
    |||||||||||||||||||||| |||  || | ||||| |  ||| || |||||||||| ||||||||||||| || || ||||| | |||||||    
T  13828181 tgaagtttgttacaagtttgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 43591901 - 43591730
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |    
T  43591901 atgaagtttgttacaatattgttagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagc 43591802  T
Q  101 cacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43591801 tacctcctttgtatattttcataagcatcaataacaatttcatcataacttctctcttctctcaattctctc 43591730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 39793908 - 39794091
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  39793908 atgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 39794007  T
Q  101 cacctcctttgtatattttcat---tagcatcaata----------acaatttcatcataacttctctcttctctcaattctctc 172  Q
     |||||||||||| | ||||||   ||| |||||||          ||| |||||||||||||||||||||||||||||||||||    
T  39794008 tacctcctttgtaca-tttcatatgtagaatcaataaagatcaattacattttcatcataacttctctcttctctcaattctctc 39794091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 16588558 - 16588440
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |    
T  16588558 atgaagtttgttacaagtttgttagaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagc 16588459  T
Q  101 cacctcctttgtatatttt 119  Q
     ||||||||||||||||||    
T  16588458 tacctcctttgtatatttt 16588440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 26311591 - 26311705
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc 104  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| | ||     
T  26311591 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctact 26311690  T
Q  105 tcctttgtatatttt 119  Q
    |||||||||||||||    
T  26311691 tcctttgtatatttt 26311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 26316082 - 26316196
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc 104  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| | ||     
T  26316082 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctact 26316181  T
Q  105 tcctttgtatatttt 119  Q
    |||||||||||||||    
T  26316182 tcctttgtatatttt 26316196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 10504698 - 10504768
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagtt-cattgcttgttgaacaagcttt 254  Q
    ||||||||||||| |||| |||||||||||||||  |||||||||  || ||||||||||||||||||||||    
T  10504698 aattcataaatctacaaa-ccctagaaactacaaaattgcttctgtttttcattgcttgttgaacaagcttt 10504768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 3742745 - 3742814
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagcttt 254  Q
    ||||||||||||| |||| || || |||||||||  |||||| ||| ||||||||||||||||||||||||    
T  3742745 aattcataaatctacaaacccata-aaactacaaaattgcttttgatttcattgcttgttgaacaagcttt 3742814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 16588419 - 16588361
Alignment:
Q  127 atcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaa 185  Q
    |||||| |||||||||||||||||| |||  |||||||||||||||  | |||||||||    
T  16588419 atcaattacaatttcatcataacttttcttctctctcaattctctctctaattcacaaa 16588361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 17895802 - 17895621
Alignment:
Q  2 tgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaacc 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||| |     
T  17895802 tgaagtttgttacaagtttgttagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagct 17895703  T
Q  102 acctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcaca 183  Q
    ||||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  17895702 acctcctttgtattttttcataagaataaataacaatttcatcataacttctctcttctctcaattctctctataattcaca 17895621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 14531867 - 14531696
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||  |    
T  14531867 atgaagtttgttacaggtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactc 14531768  T
Q  101 cacctcctttgtatattttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
     ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  14531767 taccacctttgtatattttcattagaatcaataacaatttcatcataacttctctcttctttcaattctctc 14531696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 17886914 - 17886746
Alignment:
Q  15 aagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttgtat 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  17886914 aagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtat 17886815  T
Q  115 attttcattagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcaca 183  Q
     ||||||| || || |||| |||||||||||||||||||||||||||||||||||||| || |||||||    
T  17886814 tttttcataagaataaatagcaatttcatcataacttctctcttctctcaattctctctataattcaca 17886746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 17096354 - 17096158
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  17096354 atgaagtttgttacaagtttgttagaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagc 17096255  T
Q  101 cacctcctttgtatatttt-cat-----------tagcatcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaa 185  Q
     |||||||||||| ||||| |||           ||  |||||| ||| |||||||||||||||||||||||||||||||||||  | |||||||||    
T  17096254 tacctcctttgtacattttacatacagtgaataataatatcaattacattttcatcataacttctctcttctctcaattctctctctaattcacaaa 17096158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 8315583 - 8315400
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  8315583 atgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 8315484  T
Q  101 cacctcctttgtatattttcat---tagcatcaataa----------caatttcatcataacttctctcttctctcaattctctc 172  Q
     |||||||||||| | ||||||   ||| ||||||||          || |||||||||||||||||||||||||||||||||||    
T  8315483 tacctcctttgtaca-tttcatatgtagaatcaataaagatcaatttcattttcatcataacttctctcttctctcaattctctc 8315400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 8320122 - 8319939
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| |    
T  8320122 atgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagc 8320023  T
Q  101 cacctcctttgtatattt-tcat-tagcatcaataa----------caatttcatcataacttctctcttctctcaattctctc 172  Q
     |||||||||||| |||| | || ||| ||||||||          || |||||||||||||||||||||||||||||||||||    
T  8320022 tacctcctttgtacatttcttatgtagaatcaataaagatcaatttcattttcatcataacttctctcttctctcaattctctc 8319939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 27552190 - 27552072
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||| |||||||  | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  27552190 atgaagtttgttacaggtttgttaaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 27552091  T
Q  101 cacctcctttgtatatttt 119  Q
     |||||||||||| |||||    
T  27552090 tacctcctttgtacatttt 27552072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 17779992 - 17780111
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||| ||||||||| |||| ||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  17779992 atgaagtttgttaaaagtttgttagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 17780091  T
Q  101 cacctcctttgtatattttc 120  Q
     | |||||||||| ||||||    
T  17780092 tatctcctttgtacattttc 17780111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 27574804 - 27574708
Alignment:
Q  15 aagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacctcctttg 111  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  27574804 aagtttgttagaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttg 27574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 27552050 - 27551992
Alignment:
Q  127 atcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaa 185  Q
    |||||| |||||||||||||||||| |||  ||||||||||||||| || |||||||||    
T  27552050 atcaattacaatttcatcataacttttcttctctctcaattctctctataattcacaaa 27551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 11004483 - 11004344
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  11004483 atgaagattgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagc 11004384  T
Q  101 cacctcctttgtatattttcattagcatcaataacaattt 140  Q
     ||||||||||||||||||||| || ||||||||||||||    
T  11004383 tacctcctttgtatattttcataagtatcaataacaattt 11004344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 9697665 - 9697798
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |    
T  9697665 atgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagc 9697764  T
Q  101 cacctcctttgtatattttcattagcatcaataa 134  Q
      |||||||||||||||||||| || ||||||||    
T  9697765 tgcctcctttgtatattttcatgagaatcaataa 9697798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 43547802 - 43547935
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |    
T  43547802 atgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagc 43547901  T
Q  101 cacctcctttgtatattttcattagcatcaataa 134  Q
     | ||||||||||||||||||| || ||||||||    
T  43547902 tatctcctttgtatattttcatcagaatcaataa 43547935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21847188 - 21847306
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  21847188 atgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 21847287  T
Q  101 cacctcctttgtatatttt 119  Q
     |||||||||||| |||||    
T  21847288 tacctcctttgtacatttt 21847306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21850278 - 21850396
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  21850278 atgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 21850377  T
Q  101 cacctcctttgtatatttt 119  Q
     |||||||||||| |||||    
T  21850378 tacctcctttgtacatttt 21850396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 9105352 - 9105472
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| | |    
T  9105352 atgaagtatgttacaagtttgttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagc 9105451  T
Q  101 cacctcctttgtatattttca 121  Q
     ||||||||||||||||||||    
T  9105452 tacctcctttgtatattttca 9105472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 144 - 259
Target Start/End: Complemental strand, 39399047 - 39398933
Alignment:
Q  144 cataacttctctcttctctcaattctctccatgattcacaaattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgtt 243  Q
    |||||| | |||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||    
T  39399047 cataacctttctcttctctca-ttctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgtt 39398949  T
Q  244 gaacaagctttgttgt 259  Q
    ||||||||||||||||    
T  39398948 gaacaagctttgttgt 39398933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 43554646 - 43554764
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| || || ||||||||||||||  ||||||||||||| | |    
T  43554646 atgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgagc 43554745  T
Q  101 cacctcctttgtatatttt 119  Q
     ||||| ||||||||||||    
T  43554746 tacctcttttgtatatttt 43554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 1253152 - 1253093
Alignment:
Q  127 atcaataacaatttcatcataacttctctcttctctcaattctctccatgattcacaaat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  1253152 atcaataacaatttcatcataacttctctcttctctcaattctctctataattcacaaat 1253093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 54172002 - 54171924
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  54172002 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 54167422 - 54167344
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataa--gatctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| ||||||| |||||||  |   ||||||||||||||||| ||||||||||||||||    
T  54167422 atgaagtttgttacaagtttgttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 9697852 - 9697921
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagcttt 254  Q
    ||||||||||||| || | |||||||||||||||  |||||||||  ||||||||||||||||||||||||    
T  9697852 aattcataaatctacaga-ccctagaaactacaaaattgcttctggtttcattgcttgttgaacaagcttt 9697921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 43547988 - 43548057
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagcttt 254  Q
    ||||||||||||| |||| ||||| |||||||||  |||||||||  ||||||||||||||||||||||||    
T  43547988 aattcataaatctacaaa-ccctaaaaactacaaaattgcttctggtttcattgcttgttgaacaagcttt 43548057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 38175651 - 38175598
Alignment:
Q  203 ccctagaaactacaagtttgcttctgagttcattgcttgttgaacaagctttgt 256  Q
    |||||||||||||||   || |||||| |||||||||||||||||||| |||||    
T  38175651 ccctagaaactacaaaactgtttctgatttcattgcttgttgaacaagatttgt 38175598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 43554833 - 43554897
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagttcattgcttgttgaacaa 249  Q
    ||||||||||||| |||| |||||||||||| ||  |||||| ||  |||||||||||||||||||    
T  43554833 aattcataaatctacaaa-ccctagaaactataaaattgcttatggtttcattgcttgttgaacaa 43554897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12999544 - 12999370
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |    
T  12999544 atgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagc 12999445  T
Q  101 cacctcctttgtatatttt---cattagcatcaataacaatttcatcataacttctctcttctctcaattctctc 172  Q
     | ||||||||||||||||    || || |||||| |||||||||||||||| | ||||||||||||||||||||    
T  12999444 tatctcctttgtatattttaaaaataagaatcaattacaatttcatcataacgtttctcttctctcaattctctc 12999370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 8055469 - 8055586
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    |||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  8055469 atgaagtttgttgcaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagc 8055568  T
Q  101 cacctcctttgtatattt 118  Q
     |||||||||||| ||||    
T  8055569 tacctcctttgtacattt 8055586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 6463514 - 6463400
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaaccacc 104  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | |||    
T  6463514 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacc 6463415  T
Q  105 tcctttgtatatttt 119  Q
    ||||||||| |||||    
T  6463414 tcctttgtacatttt 6463400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 8050916 - 8051033
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaac 100  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |    
T  8050916 atgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagc 8051015  T
Q  101 cacctcctttgtatattt 118  Q
      ||||||||||| ||||    
T  8051016 tgcctcctttgtacattt 8051033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 13271061 - 13270980
Alignment:
Q  5 agtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctaga 86  Q
    ||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  13271061 agtttgttataagtttgttagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36670582 - 36670660
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  36670582 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36675130 - 36675208
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  36675130 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 13270915 - 13270845
Alignment:
Q  184 aattcataaatctgcaaatccctagaaactacaagtttgcttctgagtt-cattgcttgttgaacaagcttt 254  Q
    ||||||||||||| |||| |||||||||||||||  |||||||||  || ||||||||||||||||||||||    
T  13270915 aattcataaatctacaaa-ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagcttt 13270845  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 35950315 - 35950263
Alignment:
Q  203 ccctagaaactacaagtttgcttctgagtt-cattgcttgttgaacaagcttt 254  Q
    |||||||||||||||  |||||||||  || ||||||||||||||||||||||    
T  35950315 ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagcttt 35950263  T

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Target: scaffold0440 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3059 - 3137
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  3059 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

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Target: scaffold0440; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7584 - 7662
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||| ||||||||||    
T  7584 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

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Target: scaffold0044 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44943 - 44865
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  44943 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

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Target: scaffold0044; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 49523 - 49445
Alignment:
Q  1 atgaagtttgttacaagtttgttggaggttagcaaataagat--ctagagtttgttacattgtttgtgcttcaagcaac 77  Q
    ||||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  49523 atgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

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