View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_43 (Length: 317)
Name: NF19555_low_43
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 42850185 - 42850475
Alignment:
| Q |
20 |
atcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaaattggaacactaatagcacttcaattggattactaccatgaattagtgatca |
119 |
Q |
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| T |
42850185 |
atcatcgctcaaagagataacaatacaaagagcaaaacaggggggaaaattggaacactaatagcacttcaattggattactaccatgaattagtgatca |
42850284 |
T |
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| Q |
120 |
cacatgacataagaatcactatttataataagccctctcacaagaagactgaacccattgtc-aaaaaacctatcacaaacaaataacaccaaacacata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42850285 |
cacatgacataagaatcactatttataataagccctttcacaagaagactgaacccattgtcaaaaaaacctatcacaaacaaataacaccaaacacata |
42850384 |
T |
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| Q |
219 |
taattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctacttgtgagtattatc |
309 |
Q |
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| T |
42850385 |
taattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctacttgtgagtattatc |
42850475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 30941734 - 30941513
Alignment:
| Q |
21 |
tcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaaattggaacactaatagcacttcaattggattactaccatgaattagtgatcac |
120 |
Q |
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| T |
30941734 |
tcatcagtcaaagagataaccatacaaatagcaaaaaagggga-aaatttggaacaccaatagcactgcaattggattaataccacgaagtagtgatcac |
30941636 |
T |
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| Q |
121 |
acatgacat-aagaatcactatttataataagccctctcacaagaagactgaacccattgtcaaaaaacctatcacaaacaaataacaccaaacacatat |
219 |
Q |
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|||||||| |||| ||||||||| ||| | | ||| ||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||| ||| |
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| T |
30941635 |
tcatgacataaagagtcactatttgtaaaatgtcctttcacaggaagactgaacccaatgtc--aaaacctatcacaaaccaataacaccaaacacctat |
30941538 |
T |
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| Q |
220 |
aattccacaagactagcacaaacat |
244 |
Q |
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|||||| | ||||||||| |||||| |
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| T |
30941537 |
aattccgccagactagcaaaaacat |
30941513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 30941156 - 30941120
Alignment:
| Q |
273 |
caaccattgtgtgtcgcttctacttgtgagtattatc |
309 |
Q |
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| T |
30941156 |
caaccattgtatgtcgcttctacttgtgagtattatc |
30941120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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