View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_49 (Length: 297)
Name: NF19555_low_49
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 53830783 - 53831061
Alignment:
| Q |
12 |
aatatgtaaaatggtgggtaggtgggtcaatttgagttttaaagtggtttgaagttataaataaaatattttggacaaattcctagaagtgatgtggcta |
111 |
Q |
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| T |
53830783 |
aatatgtaaaatggtgggtaggtgggtcaatttgagttttaaagtggtttgaagttataaata-----ttttggacaaattcctagaagtgatgtggcta |
53830877 |
T |
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| Q |
112 |
gttcaattcaactttgg-------------tgaaatgttgcaatttattcttcctacatagaaaaaatctaatagaatcttctggattcaaaccttacag |
198 |
Q |
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| T |
53830878 |
gttcaattcaactttggtgaaattaattggtgaaatgttgcaatttattcttcctacatagaaaaaatctaatagaatcttctggattcaaaccttacag |
53830977 |
T |
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| Q |
199 |
ttagagttacattatagctgggagagcataatcaatcttgtgtgtttgacatcttctccaacacagattattgtttgagccatt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53830978 |
ttagagttacattatagctgggagagcataatcaatcttgtgtgtttgacatcttctccaacacagattattgtttgagccatt |
53831061 |
T |
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