View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_low_5 (Length: 672)

Name: NF19555_low_5
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_low_5
NF19555_low_5
[»] chr6 (3 HSPs)
chr6 (1-634)||(33029276-33029909)
chr6 (350-500)||(9961147-9961297)
chr6 (376-500)||(29396471-29396595)
[»] chr4 (5 HSPs)
chr4 (350-500)||(45283082-45283232)
chr4 (403-500)||(40262411-40262508)
chr4 (423-500)||(16182245-16182322)
chr4 (376-506)||(4641596-4641727)
chr4 (346-416)||(12842275-12842345)
[»] chr5 (2 HSPs)
chr5 (379-500)||(31805419-31805540)
chr5 (376-495)||(36193766-36193885)
[»] chr8 (2 HSPs)
chr8 (346-418)||(36019655-36019727)
chr8 (376-495)||(43899034-43899154)
[»] chr7 (1 HSPs)
chr7 (376-495)||(46205837-46205956)
[»] chr2 (2 HSPs)
chr2 (376-476)||(24441977-24442077)
chr2 (376-425)||(40611591-40611640)
[»] chr1 (1 HSPs)
chr1 (403-486)||(39192955-39193038)
[»] chr3 (2 HSPs)
chr3 (376-432)||(2043758-2043814)
chr3 (414-454)||(25288848-25288888)


Alignment Details
Target: chr6 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 33029276 - 33029909
Alignment:
Q  1 taaaagctccacttgattaaagtagaggatgtacaccctttcccatttgtcacaccctttcataatgaaaaaacagttggttaatgatcatacattgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33029276 taaaagctccacttgattaaagtagaggatgtacaccctttcccatttgtcacaccctttcataatgaaaaaacagttggttaatgatcatacattgaac 33029375  T
Q  101 ttcagcttaaggagaacaatccactagtaaaatcaagaggaggctcccttatagattagaaatttaagggtctcaagagaaaaatatataaaggtccctg 200  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33029376 ttcagctcatggagaacaatccactagtaaaatcaagaggaggctcccttatagattagaaatttaagggtctcaagagaaaaatatataaaggtccctg 33029475  T
Q  201 gtgtatggctaaaaaagcacccaaaattggaacctactacacattgccacctacttccataattcttatcaaactcctgaaaaaaccaaacacaacctta 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33029476 gtgtatggctaaaaaagcacccgaaattggaacctactacacattgccacctacttccataattcttatcaaactcctgaaaa-accaaacacaacctta 33029574  T
Q  301 tttagttattaatcggtaatcaaacctaacttcaaactcataaaataaagaggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgcta 400  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33029575 tttagttattaatcggtaatcaaacctaacttcaaactcagaaaataaagaggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgcta 33029674  T
Q  401 tgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattttggttgtataaataacacaact 500  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  33029675 tgttttaatattttttgattgatttcgatttacatgctcatcacaatgttatatggtgttgcgttagttgtccaattttggttgtataaataacacaact 33029774  T
Q  501 ttaaaataaatcaacattaaaaaccatagtcaaatgttagaataatttacctcctacaccataaaaaccatgaatttccctaattacccttcatcctatt 600  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33029775 ctaaaataaatcaacattaaaaaccatagtcaaatgttagaataatttacctcctacaccataaaaaccatgaatttccctaattacccttcatcctatt 33029874  T
Q  601 taat-nnnnnnnttatgtttaaaagcaacattcaa 634  Q
    ||||        |||||||||||||||||||||||    
T  33029875 taataaaaaaaattatgtttaaaagcaacattcaa 33029909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 350 - 500
Target Start/End: Complemental strand, 9961297 - 9961147
Alignment:
Q  350 gaggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgt 449  Q
    |||||||||||||||| ||| || | ||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||| |||||||||    
T  9961297 gaggaatgatatgtgaacatctcgtttgtacaaccaacaacttatttgctattttttaatattttttgattgatttcgatttacgtgcttctcacaatgt 9961198  T
Q  450 tatatggtggtacgttagttgtccaattttggttgtataaataacacaact 500  Q
    ||||||||| ||| ||| |||| ||||||| |||||| |||||||||||||    
T  9961197 tatatggtgttacattaattgttcaattttagttgtacaaataacacaact 9961147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 500
Target Start/End: Original strand, 29396471 - 29396595
Alignment:
Q  376 tgtacaaccaacaacttatctgctatgttttaat-attttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtcca 474  Q
    ||||||||||||||||||| |||||| ||||||| || |||||||||||||| ||||   ||||  |||||| |||| | | || | | || ||||||||    
T  29396471 tgtacaaccaacaacttatttgctat-ttttaatgatattttgattgatttcgatttttgtgctcctcacaaagttaaaggttgttgcattggttgtcca 29396569  T
Q  475 attttggttgtataaataacacaact 500  Q
    ||||| | |||| |||||||| ||||    
T  29396570 attttagatgtacaaataacataact 29396595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 350 - 500
Target Start/End: Complemental strand, 45283232 - 45283082
Alignment:
Q  350 gaggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgt 449  Q
    |||||||||||||||| ||| |||| |||| ||||| |||||||| | |||| |||||||||||||| ||||||||| |||| ||| ||  ||||| |||    
T  45283232 gaggaatgatatgtgaacatctcatttgtaaaaccagcaacttattttctattttttaatatttttttattgatttcgatttgcatactcctcacattgt 45283133  T
Q  450 tatatggtggtacgttagttgtccaattttggttgtataaataacacaact 500  Q
    ||||||||  | | |||||| |||||||||  ||||| |||||||| ||||    
T  45283132 tatatggtattgcattagttctccaattttaattgtacaaataacataact 45283082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 500
Target Start/End: Original strand, 40262411 - 40262508
Alignment:
Q  403 ttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattttggttgtataaataacacaact 500  Q
    |||||||||||||||| |||||||||||| ||||||  |||  |||| | |||||| | | |||||||||||||||| | |||| |||||||||||||    
T  40262411 ttttaatattttttgactgatttcaatttgcatgctcctcaagatgtaaaatggtgttgcattagttgtccaattttagatgtacaaataacacaact 40262508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 423 - 500
Target Start/End: Complemental strand, 16182322 - 16182245
Alignment:
Q  423 tttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattttggttgtataaataacacaact 500  Q
    ||||||||| ||||||  ||||| |||||| ||||| | | |||||||||||||||||||||||  ||||||||||||    
T  16182322 tttcaatttgcatgctcctcacattgttatttggtgttgcattagttgtccaattttggttgtacgaataacacaact 16182245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 506
Target Start/End: Complemental strand, 4641727 - 4641596
Alignment:
Q  376 tgtacaaccaacaacttatctgctatgttttaata-ttttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtcca 474  Q
    ||||||||||||||||| | ||| || |||||||| |||||| |||||||| ||||| | ||||| ||||||||| | | | || | | | | || ||||    
T  4641727 tgtacaaccaacaacttctttgcaattttttaatactttttttattgattttaatttgcgtgcttctcacaatgtcaaaggttgttgcataaattatcca 4641628  T
Q  475 attttggttgtataaataacacaactttaaaa 506  Q
    |||||||||||| | || |||||||| |||||    
T  4641627 attttggttgtacatattacacaactctaaaa 4641596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 12842275 - 12842345
Alignment:
Q  346 taaagaggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgctatgttttaatatttttt 416  Q
    |||||||||||||||| ||| |||    | ||||||||||||||||| | |||||| ||||||||||||||    
T  12842275 taaagaggaatgatatatgaacatcatttttgtacaaccaacaacttctttgctattttttaatatttttt 12842345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 379 - 500
Target Start/End: Original strand, 31805419 - 31805540
Alignment:
Q  379 acaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattt 478  Q
    |||||||||||||||| | |||| | |||||| ||||| ||||||||  |||||| | ||  |||||||||||||||||| ||   |||||| |||||||    
T  31805419 acaaccaacaacttatttactatttcttaatactttttaattgattttgatttaccttctcttcacaatgttatatggtgttatactagttgcccaattt 31805518  T
Q  479 tggttgtataaataacacaact 500  Q
    |  ||| | |||||||||||||    
T  31805519 taattgaacaaataacacaact 31805540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 36193766 - 36193885
Alignment:
Q  376 tgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaa 475  Q
    ||||||||||||||| | | |||||| || ||||||||||| | ||||||| |||| | ||||  ||||||| ||| | |||| | | |||||||| |||    
T  36193766 tgtacaaccaacaacctttttgctattttataatatttttttagtgatttcgatttgcgtgctcttcacaatattaaaaggtgttgcattagttgttcaa 36193865  T
Q  476 ttttggttgtataaataaca 495  Q
    ||||| ||||| | ||||||    
T  36193866 ttttgattgtacatataaca 36193885  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 36019727 - 36019655
Alignment:
Q  346 taaagaggaatgatatgtgagcatatcatctgtacaaccaacaacttatctgctatgttttaatattttttga 418  Q
    ||||||||||||| |||||| ||| |  | ||||||||||||||||||| |||||  ||||||||||||||||    
T  36019727 taaagaggaatgacatgtgaacatcttttgtgtacaaccaacaacttatttgctactttttaatattttttga 36019655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 43899034 - 43899154
Alignment:
Q  376 tgtacaaccaacaacttatctgctatgttttaata-ttttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtcca 474  Q
    ||||||||||||||||| | |||||| |||||||| |||||| ||||||||  |||| | ||||  | ||| | ||| | |||| | | |||||||| ||    
T  43899034 tgtacaaccaacaacttctttgctattttttaatattttttttattgattttgatttgcgtgctccttacagtattaaagggtgttgcattagttgttca 43899133  T
Q  475 attttggttgtataaataaca 495  Q
    |||||||||||| ||||||||    
T  43899134 attttggttgtacaaataaca 43899154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 46205956 - 46205837
Alignment:
Q  376 tgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaa 475  Q
    ||||||||||||||| | | | |||| || ||||||||||| | ||||||| ||| || ||||  ||||||| ||| | |||| | | ||||||||||||    
T  46205956 tgtacaaccaacaacctttttactattttataatatttttttagtgatttcgattcacgtgctcctcacaatattaaaaggtgttgcattagttgtccaa 46205857  T
Q  476 ttttggttgtataaataaca 495  Q
    ||||||||||| | ||||||    
T  46205856 ttttggttgtacatataaca 46205837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 476
Target Start/End: Original strand, 24441977 - 24442077
Alignment:
Q  376 tgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaa 475  Q
    ||||||||||||||| | | |||||| || ||||||||||| | ||||||| |||| ||||||  ||||||| ||| | |||| | | ||||||||||||    
T  24441977 tgtacaaccaacaacctttttgctattttataatatttttttagtgatttcgatttgcatgctcctcacaatattaaaaggtgttgcattagttgtccaa 24442076  T
Q  476 t 476  Q
    |    
T  24442077 t 24442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Original strand, 40611591 - 40611640
Alignment:
Q  376 tgtacaaccaacaacttatctgctatgttttaatattttttgattgattt 425  Q
    ||||||||||||||||| | |||||| ||||||||| |||| ||||||||    
T  40611591 tgtacaaccaacaacttttttgctattttttaatatatttttattgattt 40611640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 486
Target Start/End: Original strand, 39192955 - 39193038
Alignment:
Q  403 ttttaatattttttgattgatttcaatttacatgcttatcacaatgttatatggtggtacgttagttgtccaattttggttgta 486  Q
    |||||||||||||||||||||||||||||   || |  || ||||||||||| ||| | | ||||||||| ||||||| |||||    
T  39192955 ttttaatattttttgattgatttcaatttgtgtgttactcgcaatgttatatagtgttgcattagttgtctaattttgattgta 39193038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 2043758 - 2043814
Alignment:
Q  376 tgtacaaccaacaacttatctgctatgttttaatattttttgattgatttcaattta 432  Q
    ||||||||||||||||||| |||||| ||| |  || |||||||||||||| |||||    
T  2043758 tgtacaaccaacaacttatttgctatctttaatgatattttgattgatttcgattta 2043814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 25288848 - 25288888
Alignment:
Q  414 tttgattgatttcaatttacatgcttatcacaatgttatat 454  Q
    ||||||||||||| |||||||||||| ||||||| ||||||    
T  25288848 tttgattgatttcgatttacatgcttttcacaattttatat 25288888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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