View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_low_51 (Length: 288)

Name: NF19555_low_51
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_low_51
NF19555_low_51
[»] chr8 (36 HSPs)
chr8 (13-272)||(9562114-9562376)
chr8 (131-240)||(41309774-41309883)
chr8 (29-82)||(41310415-41310468)
chr8 (177-230)||(27028830-27028883)
chr8 (177-230)||(31862492-31862545)
chr8 (177-220)||(1433557-1433600)
chr8 (182-229)||(10075574-10075621)
chr8 (177-220)||(20672759-20672802)
chr8 (128-230)||(6509273-6509374)
chr8 (177-223)||(42215100-42215146)
chr8 (177-230)||(7645977-7646030)
chr8 (177-230)||(33714254-33714307)
chr8 (177-222)||(42215324-42215369)
chr8 (177-229)||(5069697-5069749)
chr8 (178-222)||(11494153-11494197)
chr8 (137-220)||(26473731-26473813)
chr8 (136-220)||(35220701-35220784)
chr8 (177-240)||(7714231-7714294)
chr8 (179-222)||(9541016-9541059)
chr8 (127-230)||(30191110-30191212)
chr8 (177-220)||(44236841-44236884)
chr8 (177-219)||(21653091-21653133)
chr8 (127-220)||(38648360-38648453)
chr8 (177-231)||(39561559-39561613)
chr8 (176-222)||(44617806-44617852)
chr8 (177-230)||(11183544-11183597)
chr8 (127-220)||(12851185-12851277)
chr8 (179-220)||(27754413-27754454)
chr8 (179-240)||(33209240-33209301)
chr8 (177-230)||(43504750-43504803)
chr8 (177-229)||(8060669-8060721)
chr8 (177-229)||(9956832-9956884)
chr8 (177-229)||(11569475-11569527)
chr8 (188-220)||(25097395-25097427)
chr8 (177-229)||(30277263-30277315)
chr8 (186-230)||(43709272-43709316)
[»] chr5 (29 HSPs)
chr5 (127-230)||(2568657-2568759)
chr5 (177-219)||(3970698-3970740)
chr5 (177-215)||(13605391-13605429)
chr5 (177-230)||(9106820-9106873)
chr5 (177-230)||(15074767-15074820)
chr5 (177-229)||(18543215-18543266)
chr5 (176-220)||(40731478-40731522)
chr5 (178-230)||(41016178-41016230)
chr5 (177-220)||(4014442-4014485)
chr5 (177-220)||(17258901-17258944)
chr5 (142-220)||(39105473-39105551)
chr5 (177-220)||(40205092-40205135)
chr5 (177-227)||(10125736-10125786)
chr5 (177-215)||(29116968-29117006)
chr5 (178-220)||(36774726-36774768)
chr5 (177-230)||(7984968-7985021)
chr5 (177-230)||(10272449-10272502)
chr5 (177-230)||(17368675-17368728)
chr5 (177-230)||(37588378-37588431)
chr5 (180-220)||(7319029-7319069)
chr5 (177-229)||(11684414-11684466)
chr5 (177-229)||(11707055-11707107)
chr5 (127-155)||(17560183-17560211)
chr5 (178-222)||(32408611-32408655)
chr5 (177-217)||(32545046-32545086)
chr5 (177-229)||(34160731-34160783)
chr5 (178-222)||(35553207-35553251)
chr5 (176-220)||(36638756-36638800)
chr5 (177-229)||(41957469-41957521)
[»] chr3 (33 HSPs)
chr3 (127-229)||(24624210-24624311)
chr3 (177-222)||(25453877-25453922)
chr3 (120-227)||(54836996-54837102)
chr3 (178-230)||(44747427-44747479)
chr3 (177-227)||(2825149-2825199)
chr3 (127-229)||(21367667-21367769)
chr3 (177-231)||(34924556-34924610)
chr3 (131-229)||(39602183-39602280)
chr3 (177-222)||(16790396-16790441)
chr3 (177-230)||(20502086-20502139)
chr3 (125-222)||(34254775-34254871)
chr3 (176-229)||(35952091-35952144)
chr3 (177-229)||(1816583-1816635)
chr3 (177-229)||(34382942-34382994)
chr3 (177-229)||(40665429-40665481)
chr3 (127-230)||(14548690-14548792)
chr3 (177-220)||(24887301-24887344)
chr3 (127-230)||(25182956-25183059)
chr3 (177-220)||(44284098-44284141)
chr3 (127-222)||(45541578-45541672)
chr3 (177-219)||(23793594-23793636)
chr3 (177-218)||(6483812-6483853)
chr3 (177-230)||(24280710-24280763)
chr3 (177-230)||(30573932-30573985)
chr3 (177-222)||(34414802-34414847)
chr3 (178-227)||(45535237-45535286)
chr3 (180-220)||(2719477-2719517)
chr3 (176-220)||(3845579-3845623)
chr3 (182-230)||(14145911-14145959)
chr3 (177-229)||(20669172-20669224)
chr3 (184-220)||(24158528-24158564)
chr3 (190-230)||(25964442-25964482)
chr3 (177-229)||(37138290-37138342)
[»] chr1 (34 HSPs)
chr1 (177-240)||(25479570-25479633)
chr1 (128-230)||(25005765-25005868)
chr1 (181-230)||(44422698-44422747)
chr1 (184-229)||(45667787-45667832)
chr1 (177-215)||(28689470-28689508)
chr1 (177-230)||(7137016-7137069)
chr1 (177-230)||(7472310-7472363)
chr1 (177-218)||(26461959-26462000)
chr1 (177-230)||(39347985-39348038)
chr1 (177-221)||(15361048-15361092)
chr1 (177-220)||(4700084-4700127)
chr1 (177-220)||(33723400-33723443)
chr1 (177-220)||(52190138-52190181)
chr1 (177-219)||(35590910-35590952)
chr1 (182-220)||(38651454-38651492)
chr1 (135-221)||(43338124-43338209)
chr1 (177-215)||(47877123-47877161)
chr1 (177-222)||(6279406-6279451)
chr1 (177-230)||(7218092-7218145)
chr1 (177-230)||(8130435-8130488)
chr1 (127-164)||(10233616-10233653)
chr1 (177-230)||(14629984-14630037)
chr1 (176-229)||(28083307-28083360)
chr1 (177-230)||(34290235-34290288)
chr1 (127-220)||(41195162-41195254)
chr1 (177-222)||(43029420-43029465)
chr1 (178-230)||(4078168-4078220)
chr1 (177-229)||(6292493-6292545)
chr1 (176-220)||(19389910-19389954)
chr1 (180-220)||(21254768-21254808)
chr1 (177-229)||(27140478-27140530)
chr1 (176-220)||(37241839-37241883)
chr1 (177-225)||(51695513-51695561)
chr1 (184-220)||(51929724-51929760)
[»] chr2 (34 HSPs)
chr2 (131-229)||(9530702-9530798)
chr2 (177-230)||(42419996-42420049)
chr2 (177-220)||(24097817-24097860)
chr2 (177-220)||(35379034-35379077)
chr2 (178-220)||(9556248-9556290)
chr2 (176-230)||(12464490-12464544)
chr2 (177-227)||(41817170-41817220)
chr2 (176-218)||(43570425-43570467)
chr2 (177-230)||(39983341-39983394)
chr2 (142-230)||(680502-680589)
chr2 (177-229)||(43985021-43985073)
chr2 (177-240)||(9174804-9174867)
chr2 (178-229)||(9477952-9478003)
chr2 (124-230)||(18066127-18066233)
chr2 (184-230)||(10884546-10884592)
chr2 (177-219)||(11488287-11488329)
chr2 (177-219)||(15866686-15866728)
chr2 (177-219)||(18179258-18179300)
chr2 (177-219)||(33192212-33192254)
chr2 (176-229)||(6772537-6772590)
chr2 (178-227)||(19629365-19629414)
chr2 (178-227)||(19826266-19826315)
chr2 (131-220)||(33256749-33256837)
chr2 (179-220)||(42409323-42409364)
chr2 (177-230)||(43635119-43635172)
chr2 (177-222)||(44443328-44443373)
chr2 (127-163)||(5902518-5902554)
chr2 (177-213)||(9875483-9875519)
chr2 (177-229)||(10563576-10563628)
chr2 (192-228)||(26522658-26522694)
chr2 (176-220)||(33319829-33319873)
chr2 (184-220)||(36863650-36863686)
chr2 (123-163)||(41065790-41065830)
chr2 (176-220)||(45229520-45229564)
[»] chr7 (24 HSPs)
chr7 (129-230)||(46104538-46104638)
chr7 (177-228)||(12792581-12792632)
chr7 (177-230)||(514766-514819)
chr7 (177-229)||(24363619-24363671)
chr7 (185-229)||(30723065-30723109)
chr7 (177-220)||(5276240-5276283)
chr7 (177-220)||(7244689-7244732)
chr7 (177-220)||(15321802-15321845)
chr7 (177-220)||(25596042-25596085)
chr7 (177-220)||(27378846-27378889)
chr7 (181-220)||(48917368-48917407)
chr7 (177-215)||(47134775-47134813)
chr7 (176-229)||(3968215-3968268)
chr7 (185-230)||(27481320-27481365)
chr7 (177-230)||(33678779-33678832)
chr7 (177-218)||(40689004-40689045)
chr7 (177-230)||(44151498-44151551)
chr7 (185-229)||(3968783-3968827)
chr7 (177-229)||(12792642-12792694)
chr7 (127-155)||(14768398-14768426)
chr7 (177-229)||(18749835-18749887)
chr7 (180-220)||(28691856-28691896)
chr7 (177-229)||(44821959-44822011)
chr7 (127-215)||(48131567-48131654)
[»] chr6 (26 HSPs)
chr6 (129-222)||(2455817-2455909)
chr6 (124-230)||(33385526-33385633)
chr6 (129-215)||(10657252-10657337)
chr6 (177-230)||(7148665-7148718)
chr6 (177-229)||(32386124-32386176)
chr6 (177-220)||(835267-835310)
chr6 (177-220)||(27894055-27894098)
chr6 (182-229)||(31812036-31812083)
chr6 (177-220)||(32386581-32386624)
chr6 (177-224)||(32387073-32387120)
chr6 (176-230)||(1275148-1275202)
chr6 (182-220)||(4324476-4324514)
chr6 (177-227)||(4420645-4420695)
chr6 (176-230)||(19800453-19800507)
chr6 (177-227)||(20351150-20351200)
chr6 (124-218)||(34939755-34939848)
chr6 (179-220)||(2205610-2205651)
chr6 (177-230)||(3155175-3155227)
chr6 (177-230)||(4006713-4006766)
chr6 (177-230)||(31671092-31671145)
chr6 (176-229)||(34430478-34430531)
chr6 (177-229)||(1497981-1498033)
chr6 (177-229)||(11600892-11600944)
chr6 (177-213)||(12230377-12230413)
chr6 (178-222)||(29837103-29837147)
chr6 (177-229)||(33911300-33911352)
[»] chr4 (23 HSPs)
chr4 (176-230)||(9841065-9841117)
chr4 (141-230)||(28615333-28615422)
chr4 (177-229)||(43824283-43824335)
chr4 (177-229)||(47800623-47800675)
chr4 (176-215)||(2977994-2978033)
chr4 (177-220)||(39063665-39063708)
chr4 (177-220)||(50742854-50742897)
chr4 (177-220)||(53673676-53673719)
chr4 (176-231)||(55302247-55302302)
chr4 (127-229)||(2996573-2996674)
chr4 (177-219)||(9680681-9680723)
chr4 (176-230)||(17822882-17822936)
chr4 (177-215)||(19429723-19429761)
chr4 (176-230)||(24169262-24169316)
chr4 (182-228)||(27321852-27321898)
chr4 (176-214)||(30377432-30377470)
chr4 (184-222)||(54261094-54261132)
chr4 (177-230)||(7694028-7694081)
chr4 (141-210)||(44938734-44938803)
chr4 (177-230)||(51630110-51630163)
chr4 (124-153)||(52754674-52754703)
chr4 (177-213)||(5131268-5131304)
chr4 (177-229)||(27721717-27721769)
[»] scaffold0221 (1 HSPs)
scaffold0221 (176-231)||(22229-22284)
[»] scaffold0020 (1 HSPs)
scaffold0020 (177-229)||(159991-160043)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 9562114 - 9562376
Alignment:
Q  13 aatattatgcatatatattctaattttgacttggtttgaggaaaagatt---gacttagaacctggatcgatttatttgagtttatttactactacaaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9562114 aatattatgcatatatattctaattttgacttggtttgaggaaaagattattgacttagaacctggatcgatttatttgagtttatttactactacagat 9562213  T
Q  110 acttatgaaactgcgaaactgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggata 209  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  9562214 acttatgaaattgcgaaactgtttggaagagcttatgaaaacagctcatgacattctaataaaatgtttttcagcttattttcatgagcttttcaggata 9562313  T
Q  210 gcttatgaaaatatcttatagtcgatatgaataatttgttatttgataaattgttatactata 272  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  9562314 gtttatgaaaatatcttatagttgatatgaataatttgttatttgataaatagttatactata 9562376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 41309883 - 41309774
Alignment:
Q  131 tttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||||||||||| ||||| ||||   |||||| | |||||||  |||||||||||| |||| ||||||||||||||||||||||||||||    
T  41309883 tttggaagagcttatgaaaacaactcataacatgtcaataaattgtttttcatattattttcataaacttttcaggatagcttatgaaaatatcttatag 41309784  T
Q  231 tcgatatgaa 240  Q
    |  |||||||    
T  41309783 tttatatgaa 41309774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 41310468 - 41310415
Alignment:
Q  29 attctaattttgacttggtttgaggaaaagattgacttagaacctggatcgatt 82  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  41310468 attctaatcttgactgggtttgaggaaaagattgacttagaacctggatcgatt 41310415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 27028883 - 27028830
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| | |||||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttatag 27028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 31862545 - 31862492
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||||| || |||||| |||||||||| |||||||||    
T  31862545 ttttcagcttattttcataagctctctaggataacttatgaaaacatcttatag 31862492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 1433600 - 1433557
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  1433600 ttttcaacttattttcataagctctccaggatagcttatgaaaa 1433557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 10075574 - 10075621
Alignment:
Q  182 agcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||||| || ||||||||||||||||||| ||||||    
T  10075574 agcttattttcataagctctctaggatagcttatgaaaatagcttata 10075621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 20672802 - 20672759
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  20672802 ttttcagcttattttcataagctctccaggatagcttataaaaa 20672759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 6509273 - 6509374
Alignment:
Q  128 ctgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    |||||||  |||||||||  |||||||| ||||||| |  ||||| |||||| || |||||||  ||||||| |||||||||||||||||||| | ||||    
T  6509273 ctgtttgagagagcttatagaaacagcttatgacatgcctataaactatttt-caccttatttcaataagctctccaggatagcttatgaaaacagctta 6509371  T
Q  228 tag 230  Q
    |||    
T  6509372 tag 6509374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 42215100 - 42215146
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatat 223  Q
    |||||||||||||| |||||||| |||| ||||||||||||||||||    
T  42215100 ttttcagcttatttacataagctctccaagatagcttatgaaaatat 42215146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 7646030 - 7645977
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||||| |||| ||||||||||||| | |||||||    
T  7646030 ttttcagcttatttccataagctttacaggttagcttatgaaaacaacttatag 7645977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 33714254 - 33714307
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||| ||||||| |||  ||||||||||||||||| |||||||    
T  33714254 ttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatag 33714307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 42215324 - 42215369
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||    
T  42215324 ttttcagcttatttacataagctctccaggatagcatatgaaaata 42215369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 5069749 - 5069697
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||||||||||||| | |||| |||||||||| | ||||||    
T  5069749 ttttcagcttattttcataagctttcgaagatatcttatgaaaacagcttata 5069697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 11494197 - 11494153
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||||||||||||||||| | || |||||||||||||||||    
T  11494197 tttcagcttattttcataagctcttcaagatagcttatgaaaata 11494153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 26473731 - 26473813
Alignment:
Q  137 agagcttatgaaaacagctcatgacat-tctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||| ||||||| |||| |||  || |||| | |||||||||||||||| || |||||||||||||||||    
T  26473731 agagcttatgaaaacagcttatgacatgtcta-taagctagttttaa-cttattttcataagctctctaggatagcttatgaaaa 26473813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Original strand, 35220701 - 35220784
Alignment:
Q  136 aagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||| |||||||||||| | ||||||| |  ||||  ||||||| |||||||||| ||||||| ||||| ||||||||||||||    
T  35220701 aagagtttatgaaaacagtttatgacatgcccataagctattttt-agcttatttttataagctctccagaatagcttatgaaaa 35220784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 7714294 - 7714231
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatagtcgatatgaa 240  Q
    |||||| ||||||||||| |||| |||| ||||||| ||||||| | |||||||| ||||||||    
T  7714294 ttttcaacttattttcatgagctctccaagatagctcatgaaaacaacttatagttgatatgaa 7714231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 9541016 - 9541059
Alignment:
Q  179 ttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||||||||||||| ||||| || |||||||||||||||||||    
T  9541016 ttcagcttattttcaaaagctctctaggatagcttatgaaaata 9541059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 30191110 - 30191212
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatctt 226  Q
    ||||||||| |||||||||| ||||| || |||||||  | | ||| |  |||||||||||||| ||||| | || ||||||||||||| |||||| |||    
T  30191110 actgtttgggagagcttatggaaacaacttatgacatgttca-aaacttgttttcagcttatttccataaacatttcaggatagcttatcaaaatagctt 30191208  T
Q  227 atag 230  Q
    ||||    
T  30191209 atag 30191212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 44236841 - 44236884
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||    
T  44236841 ttttcagcttattttcataagctctccaatatagcttatgaaaa 44236884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 21653133 - 21653091
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||    
T  21653133 ttttcagcttattttcataagctctccaagatagctaatgaaa 21653091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 38648453 - 38648360
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgaca-ttctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||| ||| |||||||||||||||||||||| |||| ||||  | ||||| ||| || ||||||||| | | || |||||||||||||||    
T  38648453 actgtttgggagaccttatgaaaacagctcatgacagttctcataagct-tttttaagcgtaatttcataagttctacaagatagcttatgaaaa 38648360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 39561559 - 39561613
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatagt 231  Q
    |||||||||||||| |||||||||| || ||||||||| ||||| | ||||||||    
T  39561559 ttttcagcttatttccataagcttttcatgatagcttacgaaaacaacttatagt 39561613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 44617806 - 44617852
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||||||||||||||||||| | ||||||||||| | ||||||    
T  44617806 tttttcagcttattttcataagctctacaggatagcttctaaaaata 44617852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 11183597 - 11183544
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||| |||||| |||||| |||||| | |||||||    
T  11183597 ttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatag 11183544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 12851277 - 12851185
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||| | | ||||||||||||||| || ||||  | |||| || |||| | ||||||||||||||||| || |||| ||||||||||||    
T  12851277 actgtttgggaaaacttatgaaaacagcttataacatgttcataagatgtttt-cggcttattttcataagctctcaaggaaagcttatgaaaa 12851185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 27754454 - 27754413
Alignment:
Q  179 ttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||| ||||  ||||||||||||||    
T  27754454 ttcagcttattttcataagctctccaaaatagcttatgaaaa 27754413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 33209240 - 33209301
Alignment:
Q  179 ttcagcttattttcataagctttccaggatagcttatgaaaatatcttatagtcgatatgaa 240  Q
    ||||||||||||| ||||||| ||| | ||||||||| |||||| ||||||||  |||||||    
T  33209240 ttcagcttatttttataagctctccggaatagcttataaaaatagcttatagtttatatgaa 33209301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 43504803 - 43504750
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||| | |||| |||||||||| |||| |||||||||    
T  43504803 ttttcagcttatttccataagttctccaagatagcttataaaaacatcttatag 43504750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 8060721 - 8060669
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| |||||||| || ||||| ||||||||||| | ||||||    
T  8060721 ttttcagcttatttccataagctctctaggattgcttatgaaaacagcttata 8060669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 9956832 - 9956884
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||||||| | |||| ||||| ||||||||| | ||||||    
T  9956832 ttttcagcttattttcataagttctccaagatagattatgaaaacaacttata 9956884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11569475 - 11569527
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||| || || |||| ||||||||||||||| | ||||||    
T  11569475 ttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 25097427 - 25097395
Alignment:
Q  188 ttttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||| ||||||||||||||||||||    
T  25097427 ttttcataagctctccaggatagcttatgaaaa 25097395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 30277263 - 30277315
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| ||||| || || ||||||||||||||||| | ||||||    
T  30277263 ttttcagcttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 43709316 - 43709272
Alignment:
Q  186 tattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||||||| ||||||| | |||||||    
T  43709316 tattttcataagctctccaggatagctcatgaaaacaacttatag 43709272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 2568759 - 2568657
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatctt 226  Q
    ||||||| ||||| ||||||||||||||| |||||||  | ||||  ||||||| ||||||||||||| |||| |||| ||||||||||||||| | |||    
T  2568759 actgtttagaagaacttatgaaaacagcttatgacatattcataagttattttt-agcttattttcattagctctccatgatagcttatgaaaacaactt 2568661  T
Q  227 atag 230  Q
    ||||    
T  2568660 atag 2568657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 3970698 - 3970740
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  3970698 ttttcagcttattttcataagctctccagtatagcttatgaaa 3970740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 13605391 - 13605429
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttat 215  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  13605391 ttttcagtttattttcataagctttccaggatagcttat 13605429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 9106873 - 9106820
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||||  ||||||| |||||||||||| |||||||    
T  9106873 ttttcagcttatttccataagcttagcaggataacttatgaaaatagcttatag 9106820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 15074767 - 15074820
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||||||||| ||| |||||||||| | |||||||    
T  15074767 ttttcagcttatttccataagctttccagtataacttatgaaaacaacttatag 15074820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 18543215 - 18543266
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| |||||||| |||||||||||||||||||| | ||||||    
T  18543215 ttttcagcttattt-cataagctctccaggatagcttatgaaaacaacttata 18543266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 40731522 - 40731478
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||| |||||||||||||| || |||||||||||||||||    
T  40731522 tttttcagcatattttcataagctctcaaggatagcttatgaaaa 40731478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 41016230 - 41016178
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||||||||| ||| |||| |||||| | |||||||    
T  41016230 tttcagcttattttcataagctttccatgatggcttgtgaaaacaacttatag 41016178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 4014442 - 4014485
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||| | |||| |||||||||||||||    
T  4014442 ttttcagcttattttcataagttctccaagatagcttatgaaaa 4014485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 17258901 - 17258944
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||| | |||||||| |||||||||    
T  17258901 ttttcagcttattttcataagctcttcaggatagtttatgaaaa 17258944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 39105551 - 39105473
Alignment:
Q  142 ttatgaaaacagctcatgacattcta-ataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||| |||||||| |  ||||  ||||||| |||||||||||||||| | |||| |||||||||||||||    
T  39105551 ttatgaaaacagcttatgacattgttcataagctattttt-agcttattttcataagttctccaagatagcttatgaaaa 39105473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 40205092 - 40205135
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||    
T  40205092 ttttcagcttatttctataagctctccaggatagcttatgaaaa 40205135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 10125736 - 10125786
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    ||||||||||||||||||||||| |||| | || |||||||||||| ||||    
T  10125736 ttttcagcttattttcataagctctccatggtaacttatgaaaataactta 10125786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 29116968 - 29117006
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttat 215  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  29116968 ttttcagcttatttgcataagcttttcaggatagcttat 29117006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 36774726 - 36774768
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||    
T  36774726 tttcagcttatttccataagctctccaggatagcttataaaaa 36774768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 7985021 - 7984968
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||  | |||| ||||||||||||||| | |||||||    
T  7985021 ttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatag 7984968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 10272449 - 10272502
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||||||||| || |||| ||| ||||||||||| | |||||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatag 10272502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 17368728 - 17368675
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| ||||| || |||| ||||||||||||||| | |||||||    
T  17368728 ttttcagcttatttccataacctctccaagatagcttatgaaaacaacttatag 17368675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 37588378 - 37588431
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||| ||||| ||| |||||||||| | |||||||    
T  37588378 ttttcagcttatttccataagctctccagaataacttatgaaaacaacttatag 37588431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 7319029 - 7319069
Alignment:
Q  180 tcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||||||| | |||| |||||||||||||||    
T  7319029 tcagcttattttcataagttctccaagatagcttatgaaaa 7319069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 11684466 - 11684414
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||| ||||||| | |||||| ||||| |||||||||||||||| ||||||    
T  11684466 ttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttata 11684414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 11707107 - 11707055
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||| ||||| | || ||||||||||||||| | ||||||    
T  11707107 ttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 17560183 - 17560211
Alignment:
Q  127 actgtttggaagagcttatgaaaacagct 155  Q
    |||||||||||||||||||||||||||||    
T  17560183 actgtttggaagagcttatgaaaacagct 17560211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 32408611 - 32408655
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||| |||||||| |||||||| | ||||||||||||||||||||    
T  32408611 tttctgcttatttccataagctcttcaggatagcttatgaaaata 32408655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 32545086 - 32545046
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatga 217  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  32545086 ttttcagattattttcataagctctccaagatagcttatga 32545046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 34160783 - 34160731
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||||||| | |||| |||| || ||||||||| ||||||    
T  34160783 ttttcagcttattttcataagttctccaagatatctaatgaaaatagcttata 34160731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 35553207 - 35553251
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||||||||||| |||||||| ||||| ||||| ||||||||||    
T  35553207 tttcagcttatttccataagctctccagaatagcgtatgaaaata 35553251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 36638800 - 36638756
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||| |||||||| || |||||| ||||||||||    
T  36638800 tttttcagcttatttccataagctctctaggataacttatgaaaa 36638756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 41957469 - 41957521
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||| |||||||||||||| | || ||||||||||||||||| | ||||||    
T  41957469 ttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttata 41957521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 24624311 - 24624210
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatctt 226  Q
    ||||||||||||||||||||||||||||| |||||||    ||||| |  |||||||||||||  |||||| |||| |||||||| |||||||| |||||    
T  24624311 actgtttggaagagcttatgaaaacagcttatgacatgtccataaact-gttttcagcttattaacataagatttctaggatagcctatgaaaacatctt 24624213  T
Q  227 ata 229  Q
    |||    
T  24624212 ata 24624210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 25453877 - 25453922
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  25453877 ttttcagcttattttcataagctttccaggatagtttatgaaaata 25453922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 54836996 - 54837102
Alignment:
Q  120 ctgcgaaactgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    |||||| |||||||||||||  |||||||||||||| |||||||  | ||||  | |||| | ||||||||| ||||||| |||| ||||||||||||||    
T  54836996 ctgcgagactgtttggaagaatttatgaaaacagcttatgacatgttcataacttgttttcc-gcttatttttataagctgtccaagatagcttatgaaa 54837094  T
Q  220 atatctta 227  Q
    ||| ||||    
T  54837095 ataactta 54837102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 44747427 - 44747479
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||||||||| |||||| ||||||||||||||| | |||||||    
T  44747427 tttcagcttattttcataagttttccaagatagcttatgaaaacagcttatag 44747479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 2825199 - 2825149
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||| ||||    
T  2825199 ttttaagcttattttcataagctctccaagatagcttatgaaaataactta 2825149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 21367769 - 21367667
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatctt 226  Q
    ||||||||| ||| ||||||||||||||| |||||||| |    ||    ||||||||||||||||||||| | |||| ||||||||||||||| | |||    
T  21367769 actgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaactt 21367670  T
Q  227 ata 229  Q
    |||    
T  21367669 ata 21367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 34924556 - 34924610
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatagt 231  Q
    ||||||||||||||||||||||| || | ||||||||||||||||| || |||||    
T  34924556 ttttcagcttattttcataagctctctaagatagcttatgaaaatagctcatagt 34924610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 39602183 - 39602280
Alignment:
Q  131 tttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||||| |||||| |||||||  | || ||||  |||||| |||||||||||||| | || | ||||||||||||||| | ||||||    
T  39602183 tttggaagagcttatgaagacagcttatgacatgttcat-aaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttata 39602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 16790396 - 16790441
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||    
T  16790396 ttttcagtttattttcataagctatccaagatagcttatgaaaata 16790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 20502086 - 20502139
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||| ||||||||| | |||||||||||||||||| | |||||||    
T  20502086 ttttcagcttattctcataagctcttcaggatagcttatgaaaacagcttatag 20502139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 34254775 - 34254871
Alignment:
Q  125 aaactgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||||||||||| ||||||||||||||| | |||||||    ||||  || ||| |||||||||| |||||| | ||||| ||||||||||||||||    
T  34254775 aaactgtttggaaaagcttatgaaaacagtttatgacatatccataagctacttt-cagcttatttacataagttctccagaatagcttatgaaaata 34254871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 35952091 - 35952144
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||| ||||||||| ||||||| ||||||| ||||| ||||||    
T  35952091 tttttcagcttatttccataagcttgccaggattgcttatggaaatagcttata 35952144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 1816635 - 1816583
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||| | ||||||    
T  1816635 ttttcagcttattttgataagctctccagtatagcttatgaaaacaacttata 1816583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 34382994 - 34382942
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||| ||||||||| |||||||| |||||||||||||||||| | ||||||    
T  34382994 ttttcatcttattttcttaagcttttcaggatagcttatgaaaagaacttata 34382942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 40665481 - 40665429
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||| ||||||| |||| |||| |||||||||| ||||||||    
T  40665481 ttttcagcttatttttataagctctccaagataacttatgaaaacatcttata 40665429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 14548690 - 14548792
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatctt 226  Q
    ||||||||  |||||||||||||||| |  |||||||| |||||   |  |||||||||||||| |||||||| ||||| ||| |||||||||| | |||    
T  14548690 actgtttgagagagcttatgaaaacaacgtatgacattttaataggct-gttttcagcttatttccataagctctccagaataacttatgaaaacaactt 14548788  T
Q  227 atag 230  Q
    ||||    
T  14548789 atag 14548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 24887301 - 24887344
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||  |||||||| ||||||||||||||||||||    
T  24887301 ttttcagcttattcccataagctctccaggatagcttatgaaaa 24887344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 25182956 - 25183059
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatctt 226  Q
    ||||||||  |||||||||||||||| || |||||||    ||||  ||||||||||| ||||| || ||  |||||| ||||||||||||||| | |||    
T  25182956 actgtttgagagagcttatgaaaacaacttatgacatatccataagctatttttcagcatatttccacaaattttccatgatagcttatgaaaacagctt 25183055  T
Q  227 atag 230  Q
    ||||    
T  25183056 atag 25183059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 44284098 - 44284141
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||    
T  44284098 ttttcagcttatttctataagctctccaggatagcttatgaaaa 44284141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 45541672 - 45541578
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||||| ||||| ||||||||||||||| |||||||  | ||||  |  ||||||| ||||| ||||||| | |||| |||||||||||||||||    
T  45541672 actgtttagaagaacttatgaaaacagcttatgacatgttcataagct-gttttcaggttattctcataagttatccaagatagcttatgaaaata 45541578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 23793636 - 23793594
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    ||||||||||||||  |||||||||||| ||||||||||||||    
T  23793636 ttttcagcttatttctataagctttccaagatagcttatgaaa 23793594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 6483853 - 6483812
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaa 218  Q
    ||||||||||||||| ||||||| || |||||||||||||||    
T  6483853 ttttcagcttattttaataagctctctaggatagcttatgaa 6483812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 24280763 - 24280710
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||| |||||||||||||||| |||| |||||||||||| || | |||||||    
T  24280763 ttttcaacttattttcataagctctccatgatagcttatgacaacagcttatag 24280710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 30573932 - 30573985
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||| ||||| |||| |||| ||||||||||||||| ||| |||||    
T  30573932 ttttcagcttatgttcatcagctctccaagatagcttatgaaaacatcatatag 30573985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 34414802 - 34414847
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||||||||||||||| || |||| ||||| |||||||||||    
T  34414802 ttttcagcttattttcataaactctccatgatagtttatgaaaata 34414847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 45535237 - 45535286
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    ||||| ||||||||||||| || ||||| |||||||||||||| ||||||    
T  45535237 tttcaacttattttcataaactctccagtatagcttatgaaaacatctta 45535286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 2719517 - 2719477
Alignment:
Q  180 tcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||||||| | |||| |||||||||||||||    
T  2719517 tcagcttattttcataagttctccaagatagcttatgaaaa 2719477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 3845579 - 3845623
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||||||||||| | |||| |||| ||||||||||    
T  3845579 tttttcagcttattttcataagttctccaagataacttatgaaaa 3845623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 14145959 - 14145911
Alignment:
Q  182 agcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||   |||| ||||||||||||||||| |||||||    
T  14145959 agcttattttcataagtaatccaagatagcttatgaaaataacttatag 14145911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 20669224 - 20669172
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||| |||||||| |||||||| |||| ||||||||||||||| | ||||||    
T  20669224 ttttccgcttatttacataagctctccaagatagcttatgaaaacagcttata 20669172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 24158528 - 24158564
Alignment:
Q  184 cttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  24158528 cttatttccataagctctccaggatagcttatgaaaa 24158564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 25964482 - 25964442
Alignment:
Q  190 ttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||||||||||| | |||||||    
T  25964482 ttcataagctttccgggatagcttatgaaaacagcttatag 25964442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 37138342 - 37138290
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||| ||| || || | ||||||||||||||||| ||||||    
T  37138342 ttttcagcttattttcctaaactctctaagatagcttatgaaaataacttata 37138290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 25479633 - 25479570
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatagtcgatatgaa 240  Q
    ||||||||||||||||||||||| || ||||||||||||||||| | ||||||| | |||||||    
T  25479633 ttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaa 25479570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 25005765 - 25005868
Alignment:
Q  128 ctgtttggaagagcttatgaaaacagctcatgacattctaa--taaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatct 225  Q
    |||||||| |||||||||||||||| || ||||| |||||   ||| |||||||  ||||| |||| ||||||| |||||||||||||||||||| | ||    
T  25005765 ctgtttgggagagcttatgaaaacaacttatgactttctatagtaagatatttta-agcttgtttttataagctctccaggatagcttatgaaaacaact 25005863  T
Q  226 tatag 230  Q
    |||||    
T  25005864 tatag 25005868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 44422747 - 44422698
Alignment:
Q  181 cagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  44422747 cagcttattttcataagctctccaggatagcttataaaaatagcttatag 44422698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 45667787 - 45667832
Alignment:
Q  184 cttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||    
T  45667787 cttattttcataagctctccaggatagcttaagaaaatatcttata 45667832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 28689470 - 28689508
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttat 215  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  28689470 ttttcagcttattttcataagctttccaagatagcttat 28689508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 7137016 - 7137069
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||| | |||| ||||||||||||||| | |||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacagcttatag 7137069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 7472363 - 7472310
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||| | |||||||    
T  7472363 ttttcagcttattttcataagctctccaagatagcttatggaaacagcttatag 7472310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 26461959 - 26462000
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaa 218  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  26461959 ttttcagcttattttcataagctctgcaggatagcttatgaa 26462000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 39347985 - 39348038
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||||| |||||||| ||||||||| | |||||||    
T  39347985 ttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttatag 39348038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 15361092 - 15361048
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaat 221  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||    
T  15361092 ttttcagcttattttcataagctctccaggatagccaatgaaaat 15361048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 4700084 - 4700127
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||    
T  4700084 ttttcagcttattttcataagctctccaggatagtttataaaaa 4700127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 33723400 - 33723443
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||| |||||||||| |||| |||||||||||||    
T  33723400 ttttcagcttatttccataagctttacagggtagcttatgaaaa 33723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 52190181 - 52190138
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||||| |||||| |||| |||||||||||||||    
T  52190181 ttttcagcttattttcgtaagctctccatgatagcttatgaaaa 52190138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 35590910 - 35590952
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    |||||||||||||| |||||||| |||| ||||||||||||||    
T  35590910 ttttcagcttatttccataagctctccatgatagcttatgaaa 35590952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 38651454 - 38651492
Alignment:
Q  182 agcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  38651454 agcttatttttataagctctccaggatagcttatgaaaa 38651492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 43338209 - 43338124
Alignment:
Q  135 gaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaat 221  Q
    ||||| |||||| |||||||| |||||||  | ||||  |||||| |||| |||||||||||||| |||| | ||||||||||||||    
T  43338209 gaagaacttatggaaacagcttatgacatgttcataatctatttt-cagcctattttcataagctctccatgttagcttatgaaaat 43338124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 47877161 - 47877123
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttat 215  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  47877161 ttttcagcttattttcataagctttccataatagcttat 47877123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 6279451 - 6279406
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||| ||||| |||||||| || |||||||||||||||||||    
T  6279451 ttttcagcgtatttccataagctctctaggatagcttatgaaaata 6279406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 7218092 - 7218145
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||| |||||||||||||| | |||||||||| ||||||||| | |||||||    
T  7218092 ttttcaacttattttcataagttctccaggataggttatgaaaacaacttatag 7218145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 8130488 - 8130435
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||| ||| |||||| |||||| ||||||||||||||| | |||||||    
T  8130488 ttttcagcttgtttccataagttttccatgatagcttatgaaaacaacttatag 8130435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 10233616 - 10233653
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacatt 164  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  10233616 actgtttggaagaacttatgaaaacagcttatgacatt 10233653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 14629984 - 14630037
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||  | |||| ||||||||||||||||| |||||||    
T  14629984 ttttcagcttatttccataaagtctccaagatagcttatgaaaatagcttatag 14630037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 28083307 - 28083360
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||||||||||| |  ||||||| |||||| |||| ||||||    
T  28083307 tttttcagcttattttcataagctctttaggatagattatgataataacttata 28083360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 34290288 - 34290235
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||| | | || ||||||||||||||| | |||||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatag 34290235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 41195162 - 41195254
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||| ||| ||| |  ||| |||| |||||||| ||||||  | |||||||||||||||||||||| | |||| ||||| |||||||||    
T  41195162 actgtttgggagaacttttataaatagcttatgacattttaataagct-tttttcagcttattttcataagttctccaagatagtttatgaaaa 41195254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 43029420 - 43029465
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||||||||| ||||||||||  || ||||||||||||||||    
T  43029420 ttttcagcttatttccataagctttaaagaatagcttatgaaaata 43029465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 4078168 - 4078220
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||| ||||  ||| ||||||||||||||| | |||||||    
T  4078168 tttcagcttattttcattagctcgccatgatagcttatgaaaacaacttatag 4078220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 6292545 - 6292493
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||||||||| ||||  |||| ||| ||||||| ||||||    
T  6292545 ttttcagcttattttcataagctctccaaaatagtttacgaaaatagcttata 6292493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 19389954 - 19389910
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||| |||||||||||| ||||| |||| |||||||||||||||    
T  19389954 ttttttagcttattttcacaagctctccaagatagcttatgaaaa 19389910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 21254768 - 21254808
Alignment:
Q  180 tcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||||||||| |||| ||||||||| |||||    
T  21254768 tcagcttattttcataagctctccaagatagcttaagaaaa 21254808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 27140530 - 27140478
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| |||||||| |||| |||||||||| |||| | ||||||    
T  27140530 ttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 37241839 - 37241883
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||| ||||||||||||||||||| || |||||| ||||||||||    
T  37241839 ttttccagcttattttcataagctctctaggatatcttatgaaaa 37241883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 51695513 - 51695561
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatct 225  Q
    ||||||||||||||||||||  | |||| ||||||||||||||| ||||    
T  51695513 ttttcagcttattttcataaattctccaagatagcttatgaaaacatct 51695561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 51929724 - 51929760
Alignment:
Q  184 cttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  51929724 cttatttacataagctttccaagatagcttatgaaaa 51929760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 9530702 - 9530798
Alignment:
Q  131 tttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||| ||| |||| |||||||    ||||  ||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||    
T  9530702 tttggaagagcttatggaaatagct-atgacatgtccataagttattttt-agcttactttcataagctctccaggatagcttatgaaaatatcatata 9530798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 42420049 - 42419996
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||| |||||||    
T  42420049 ttttcagctcatttccataagctatccaggatagcttatgaaaatagcttatag 42419996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 24097860 - 24097817
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  24097860 ttttcagcttattttcataagctctccaggataacttatgaaaa 24097817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 35379034 - 35379077
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||| |||| |||||||||||||||    
T  35379034 ttttcagcttattttcataagctctccaagatagcttatgaaaa 35379077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 9556290 - 9556248
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  9556290 tttcaacttattttcataagctttctaggatagcttatgaaaa 9556248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 12464490 - 12464544
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||||||| ||| | |||| ||||||||||||||||| |||||||    
T  12464490 tttttcagcttattttcacaagttctccaagatagcttatgaaaatagcttatag 12464544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 41817220 - 41817170
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||| ||||    
T  41817220 ttttcagcttatttccataagctctccaggatagtttatgaaaatagctta 41817170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 43570467 - 43570425
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaa 218  Q
    ||||| ||||||||||||||||||||||||||| |||||||||    
T  43570467 ttttttagcttattttcataagctttccaggatggcttatgaa 43570425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 39983394 - 39983341
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||| |||||||||| |||| |||||||||||||||||||| | |||||||    
T  39983394 ttttcagtttattttcattagctctccaggatagcttatgaaaacaacttatag 39983341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 680589 - 680502
Alignment:
Q  142 ttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||  | ||||| | |||| ||||||||||||| ||| | | || ||||||||||||||||| |||||||    
T  680589 ttatgaaaacagcttatgacatgtttataaactgtttt-cagcttattttcacaagttcttcaagatagcttatgaaaatagcttatag 680502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 43985021 - 43985073
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||||||||| | || ||||||||||||||| | ||||||    
T  43985021 ttttcagcttattttcataagctcttcaagatagcttatgaaaacaacttata 43985073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 9174867 - 9174804
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatagtcgatatgaa 240  Q
    ||||||||||||||||||||||| |  | ||||||||||||||| | ||||||||  |||||||    
T  9174867 ttttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatagtaaatatgaa 9174804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 9478003 - 9477952
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||| ||||||||||||| || |||||||||||||||||||| | ||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttata 9477952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 18066233 - 18066127
Alignment:
Q  124 gaaactgtttggaagagcttatgaaaacagctcatgacatt-ctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||||| | | | ||||||||||||||| |||||||| || ||||  |||||| || ||||||||| |||| | |||| ||||||||||||||| |    
T  18066233 gaaactgttttgtacaacttatgaaaacagcttatgacattgctcataagctatttt-caccttattttcttaagttctccaagatagcttatgaaaaca 18066135  T
Q  223 tcttatag 230  Q
     |||||||    
T  18066134 gcttatag 18066127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 10884546 - 10884592
Alignment:
Q  184 cttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||||| || ||||||||||||||||| | |||||||    
T  10884546 cttattttcataagctctctaggatagcttatgaaaacagcttatag 10884592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 11488329 - 11488287
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    |||||||||||||| ||||| || |||||||||||||||||||    
T  11488329 ttttcagcttatttgcataatctctccaggatagcttatgaaa 11488287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 15866686 - 15866728
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  15866686 ttttcagcttgtttacataagctctccaggatagcttatgaaa 15866728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 18179258 - 18179300
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    |||||||||||||||| |||| | |||||||||||||||||||    
T  18179258 ttttcagcttattttcgtaagttctccaggatagcttatgaaa 18179300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 33192254 - 33192212
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    |||||||||||| || ||||||| |||||||||||||||||||    
T  33192254 ttttcagcttatatttataagctctccaggatagcttatgaaa 33192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 6772537 - 6772590
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||| ||||||||||| |||  |||| |||||||||||| ||||||    
T  6772537 tttttcagcttactttcataagctctcctagataccttatgaaaataacttata 6772590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 19629414 - 19629365
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    ||||| ||||||||||||| || ||||| |||||||||||||| ||||||    
T  19629414 tttcaacttattttcataaactctccagtatagcttatgaaaacatctta 19629365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 19826315 - 19826266
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    ||||| ||||||||||||| || ||||| |||||||||||||| ||||||    
T  19826315 tttcaacttattttcataaactctccagtatagcttatgaaaacatctta 19826266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 33256837 - 33256749
Alignment:
Q  131 tttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||| ||||||||||||||||||| |||||||  | ||||| |  || |||||||||||||||| | | | |||||| |||||||||||    
T  33256837 tttgggagagcttatgaaaacagcttatgacatgttcataaact-gttctcagcttattttcatacggtcttcaggatggcttatgaaaa 33256749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 42409323 - 42409364
Alignment:
Q  179 ttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||    
T  42409323 ttcagcttattttcataagctctccagaataacttatgaaaa 42409364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 43635119 - 43635172
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||| |||||||||||||||||||| || |||||||||||| || | |||||||    
T  43635119 ttttaagcttattttcataagcttttcatgatagcttatgagaacaacttatag 43635172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 44443373 - 44443328
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||||||||||||||||| ||| || | |||||||||||||||||    
T  44443373 ttttcagcttattttcatatgctctcaaagatagcttatgaaaata 44443328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 5902518 - 5902554
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacat 163  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  5902518 actgtttggaagaacttatgaaaacagcttatgacat 5902554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 9875483 - 9875519
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagctt 213  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  9875483 ttttcagcttattttcacaagctttccatgatagctt 9875519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 10563576 - 10563628
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||| |||||| | ||| |||||||||||||| | ||||||    
T  10563576 ttttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttata 10563628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 26522658 - 26522694
Alignment:
Q  192 cataagctttccaggatagcttatgaaaatatcttat 228  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26522658 cataagctttctaggatagcttatgaaaatagcttat 26522694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 33319829 - 33319873
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||||||||||| | |||| ||||| |||||||||    
T  33319829 tttttcagcttattttcataagttctccaagatagtttatgaaaa 33319873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 36863650 - 36863686
Alignment:
Q  184 cttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||||| |||| |||||||||||||||    
T  36863650 cttattttcataagctctccaagatagcttatgaaaa 36863686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 41065830 - 41065790
Alignment:
Q  123 cgaaactgtttggaagagcttatgaaaacagctcatgacat 163  Q
    |||||| |||||||||||||| ||||||||||| |||||||    
T  41065830 cgaaacagtttggaagagcttgtgaaaacagcttatgacat 41065790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 45229564 - 45229520
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||||||||||| | || | |||||||||||||||    
T  45229564 tttttcagcttattttcataagttctcgaagatagcttatgaaaa 45229520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 46104538 - 46104638
Alignment:
Q  129 tgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatcttat 228  Q
    ||||||| | || ||||||||||| ||||||||||   |||||||| |||  ||||||||||||||||||| | ||| |||||||||||||| | |||||    
T  46104538 tgtttgggaaagattatgaaaacaactcatgacatgtcaataaaatgtttc-cagcttattttcataagctcttcagcatagcttatgaaaacaacttat 46104636  T
Q  229 ag 230  Q
    ||    
T  46104637 ag 46104638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 12792581 - 12792632
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttat 228  Q
    ||||||||||||||||||||||| | || ||||||||||||||||| |||||    
T  12792581 ttttcagcttattttcataagctcttcaagatagcttatgaaaatagcttat 12792632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 514819 - 514766
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||| | ||||| |||||||||||||||||||| | |||||||    
T  514819 ttttcagcttattttgacaagctctccaggatagcttatgaaaacagcttatag 514766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 24363619 - 24363671
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| ||||| || |||||||||||||||||||| | ||||||    
T  24363619 ttttcagcttatttccataacctctccaggatagcttatgaaaacaacttata 24363671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 30723065 - 30723109
Alignment:
Q  185 ttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||||    
T  30723065 ttattttcaaaagctctccaggatagcttatgaaaatagcttata 30723109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 5276283 - 5276240
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||| ||||||||||| || ||||||||||||||||||||||    
T  5276283 ttttcaccttattttcattagttttccaggatagcttatgaaaa 5276240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 7244732 - 7244689
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||    
T  7244732 ttttcagcttattttcataagctctccaatatagcttatgaaaa 7244689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 15321802 - 15321845
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||    
T  15321802 ttttgagcttatttccataagcttttcaggatagcttatgaaaa 15321845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 25596085 - 25596042
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||| |||||||||||||||| |||| |||||||||||||||    
T  25596085 ttttcaacttattttcataagctctccaagatagcttatgaaaa 25596042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 27378846 - 27378889
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||    
T  27378846 ttttcagtttattttcataagctctccaggatagtttatgaaaa 27378889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 48917368 - 48917407
Alignment:
Q  181 cagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  48917368 cagcttattttcataagctctccaagatagcttatgaaaa 48917407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 47134775 - 47134813
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttat 215  Q
    |||||||||||||||||||||||||| || |||||||||    
T  47134775 ttttcagcttattttcataagctttcaagaatagcttat 47134813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 3968215 - 3968268
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||| |||||||||||| | |||||  ||||||||||||||| ||||||    
T  3968215 tttttcagcctattttcataagttctccagcgtagcttatgaaaatagcttata 3968268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 27481320 - 27481365
Alignment:
Q  185 ttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||| |||||||| |||| ||||||||||||||||| |||||||    
T  27481320 ttatttccataagctatccatgatagcttatgaaaataacttatag 27481365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 33678832 - 33678779
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||| |||||||||| ||| |||||| ||||||||||||||| | |||||||    
T  33678832 ttttcaacttattttcacaagttttccaagatagcttatgaaaacagcttatag 33678779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 40689004 - 40689045
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaa 218  Q
    |||| |||||||||||||||| | ||||||||||||||||||    
T  40689004 ttttgagcttattttcataagttatccaggatagcttatgaa 40689045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 44151498 - 44151551
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||||||||| || ||||| ||||||||| | |||||||    
T  44151498 ttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatag 44151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 3968783 - 3968827
Alignment:
Q  185 ttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||| ||||| || |||||||||||||||||||||| ||||||    
T  3968783 ttatttccataaactctccaggatagcttatgaaaatagcttata 3968827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 12792642 - 12792694
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| |||| ||| | || ||||||||||||||||| ||||||    
T  12792642 ttttcagcttatttccatatgctcttcaagatagcttatgaaaatagcttata 12792694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 14768426 - 14768398
Alignment:
Q  127 actgtttggaagagcttatgaaaacagct 155  Q
    |||||||||||||||||||||||||||||    
T  14768426 actgtttggaagagcttatgaaaacagct 14768398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 18749835 - 18749887
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| |||||| |||||  ||||||||||||||| | ||||||    
T  18749835 ttttcagcttatttccataagttttccgtgatagcttatgaaaacagcttata 18749887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 28691856 - 28691896
Alignment:
Q  180 tcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||| ||||||||||||| | ||||||||||||||||||||    
T  28691856 tcagtttattttcataagatctccaggatagcttatgaaaa 28691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 44822011 - 44821959
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||| |||||||||||||| | ||||| |||||||||||||| | ||||||    
T  44822011 ttttcaacttattttcataagttctccagaatagcttatgaaaacagcttata 44821959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 48131654 - 48131567
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttat 215  Q
    ||||||||||||| |||| ||||| |  | |||||||| | ||||| |||||| ||||||||  ||||||||| |||||||||| ||||    
T  48131654 actgtttggaagaacttacgaaaataagttatgacattttcataaactatttt-cagcttatactcataagctctccaggatagattat 48131567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 2455909 - 2455817
Alignment:
Q  129 tgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||| |||||||||||| ||||| || ||||||| |  ||||| |||||| || ||||||| |||||||| |||| |||||||||||||||||    
T  2455909 tgtttagaagagcttatggaaacaacttatgacatgcccataaactatttt-caacttatttccataagctctccaagatagcttatgaaaata 2455817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 33385633 - 33385526
Alignment:
Q  124 gaaactgtttggaagagcttatgaaaacagctcatgacat-tctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||||||||||||||| ||||| |||||||||||||||| || |  ||| |  |||||||||| ||| ||||| || || || | ||||||||||||||    
T  33385633 gaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagcttttttccataaactgtctagaaaagcttatgaaaata 33385534  T
Q  223 tcttatag 230  Q
     |||||||    
T  33385533 gcttatag 33385526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 10657337 - 10657252
Alignment:
Q  129 tgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttat 215  Q
    ||||||| |||||||| || |||||||||| |||| || |||| || |||| |||  ||||||||||||||||||| ||||||||||    
T  10657337 tgtttgggagagcttacgagaacagctcataacatgctcataagatgtttt-cagtctattttcataagctttccacgatagcttat 10657252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 7148718 - 7148665
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||| |||||||||||||||| |||||| |||||||| |||||| |||||||    
T  7148718 ttttcaacttattttcataagctctccagggtagcttattaaaataccttatag 7148665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 32386124 - 32386176
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||| ||||||||||||||||||||| || ||||||| | ||||||    
T  32386124 ttttcagcttactttcataagctttccaggataactaatgaaaacagcttata 32386176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 835267 - 835310
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||| | |||| |||||||||||||||    
T  835267 ttttcagcttattttcataagttctccaagatagcttatgaaaa 835310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 27894098 - 27894055
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||||| || |||| ||||||||||    
T  27894098 ttttcagcttattttcataagcttttcaagatatcttatgaaaa 27894055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 31812036 - 31812083
Alignment:
Q  182 agcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||||| |||| ||||||||||||||| | ||||||    
T  31812036 agcttattttcataagctctccaagatagcttatgaaaacaacttata 31812083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 32386581 - 32386624
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||||||||||||||||| ||||||||| || |||||||    
T  32386581 ttttcagcttattttcataagctctccaggataactaatgaaaa 32386624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 32387073 - 32387120
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatc 224  Q
    ||||||||||||||||||||||| | ||| ||| ||||||||||||||    
T  32387073 ttttcagcttattttcataagctcttcagaataacttatgaaaatatc 32387120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 1275202 - 1275148
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||| |||||||| ||||||||| | |||||||| | |||||||    
T  1275202 tttttcagcttatttccataagctctccaggataacatatgaaaacagcttatag 1275148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 4324476 - 4324514
Alignment:
Q  182 agcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  4324476 agcttatttgcataagttttccaggatagcttatgaaaa 4324514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 4420695 - 4420645
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    |||||||||||||| |||||||| |||| ||||||||| ||||||| ||||    
T  4420695 ttttcagcttatttccataagctctccaagatagcttaggaaaataactta 4420645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 19800453 - 19800507
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||||||||||  |||| ||||||||||||| ||| | |||||||    
T  19800453 tttttcagcttattttcataatttttctaggatagcttatgtaaaaaacttatag 19800507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 20351200 - 20351150
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatctta 227  Q
    ||||||||||||||| ||||||| |||  ||||||||||||||| ||||||    
T  20351200 ttttcagcttatttttataagctatccgagatagcttatgaaaacatctta 20351150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 34939848 - 34939755
Alignment:
Q  124 gaaactgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaa 218  Q
    |||||||||| | |||||||| | |||||||| |||||||    ||||| | |||| |||||||||| ||||| || ||||||||||||||||||    
T  34939848 gaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgtttt-cagcttatttccataaactctccaggatagcttatgaa 34939755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 2205610 - 2205651
Alignment:
Q  179 ttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||| |||||||| |||| |||||||||||||||    
T  2205610 ttcagcttatttccataagctctccaagatagcttatgaaaa 2205651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 3155227 - 3155175
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| |||| ||| ||||||||| |||||||||||| |||||||    
T  3155227 ttttcagcttatttccata-gctctccaggatatcttatgaaaatagcttatag 3155175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 4006766 - 4006713
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||||||||| || ||  |||||||||||||||| | |||||||    
T  4006766 ttttcagcttattttcataacctctcagggatagcttatgaaaacaacttatag 4006713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 31671092 - 31671145
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||||| || ||||||| ||| ||||| | |||||||    
T  31671092 ttttcagcttattttcataagctatctaggatagtttacgaaaacagcttatag 31671145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 34430478 - 34430531
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||||||||||  | |||| ||||||||||||||| | ||||||    
T  34430478 tttttcagcttattttcataacttctccaagatagcttatgaaaacaccttata 34430531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 1498033 - 1497981
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||| |||||||||||||||| |||| ||||| |||||||||  |||||||    
T  1498033 ttttcaccttattttcataagctctccaagatagtttatgaaaacttcttata 1497981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11600892 - 11600944
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||||| ||| | ||| | |||||||||||||| ||||||    
T  11600892 ttttcagcttattttcataggctcttcagaacagcttatgaaaataacttata 11600944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 12230413 - 12230377
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagctt 213  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  12230413 ttttcagcttattttcataagctctccatgatagctt 12230377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 29837103 - 29837147
Alignment:
Q  178 tttcagcttattttcataagctttccaggatagcttatgaaaata 222  Q
    |||||||| ||||||||||||| | |||||||| |||||||||||    
T  29837103 tttcagctaattttcataagctcttcaggatagtttatgaaaata 29837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 33911300 - 33911352
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||| || |||| |||||||| ||||||||| | ||||||    
T  33911300 ttttcagcttattttcacaaacttttcaggatagtttatgaaaacagcttata 33911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 9841117 - 9841065
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||||||| |||  ||||||||||||||||||||| |||||||||    
T  9841117 tttttcagcttattttcacaag--ttccaggatagcttatgaaaacatcttatag 9841065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 28615422 - 28615333
Alignment:
Q  141 cttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||| |||||||| | ||||  | |||||  ||||||||||||||||| | ||  |||||||||||||| | |||||||    
T  28615422 cttatgaaaacagctaatgacattttcataagttgttttttggcttattttcataagctcttcattatagcttatgaaaacaacttatag 28615333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 43824335 - 43824283
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| |||||||||||||||||| |||| ||||| | ||||||    
T  43824335 ttttcagcttatttccataagctttccaggataacttacgaaaaaagcttata 43824283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 47800675 - 47800623
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||||||||| | || ||||||||||||||| | ||||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 2977994 - 2978033
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttat 215  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  2977994 tttttcagcttattttcataagttttctaggatagcttat 2978033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 39063665 - 39063708
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||    
T  39063665 ttttcagtttattttcataagctctccaggatagcttataaaaa 39063708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 50742854 - 50742897
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||| || ||||||||||||| ||||||||||||||||||||    
T  50742854 ttttcaactcattttcataagctctccaggatagcttatgaaaa 50742897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 53673676 - 53673719
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaa 220  Q
    |||||||||||||| |||||||| |||| |||||||||||||||    
T  53673676 ttttcagcttatttacataagctctccaagatagcttatgaaaa 53673719  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 55302302 - 55302247
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatagt 231  Q
    |||||||||||||||||||||| ||||||  ||||||||||| || | ||||||||    
T  55302302 tttttcagcttattttcataagttttccaacatagcttatgataacagcttatagt 55302247  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 2996674 - 2996573
Alignment:
Q  127 actgtttggaagagcttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatagcttatgaaaatatctt 226  Q
    ||||||||  |||||||||||||||| || |||||||    ||||  | ||||||| |||||||||||| ||| |||| ||||||||||||||| | |||    
T  2996674 actgtttgagagagcttatgaaaacaacttatgacatgtccataagct-tttttcaacttattttcatacgctctccaagatagcttatgaaaacaactt 2996576  T
Q  227 ata 229  Q
    |||    
T  2996575 ata 2996573  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 9680723 - 9680681
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaa 219  Q
    |||||||| | |||||| |||||||||||||||||||||||||    
T  9680723 ttttcagcgttttttcaaaagctttccaggatagcttatgaaa 9680681  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 17822882 - 17822936
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||| |||||||||||||||| | |||| ||||||||||||||| | |||||||    
T  17822882 ttttttagcttattttcataagttctccaagatagcttatgaaaacaacttatag 17822936  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 19429761 - 19429723
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttat 215  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  19429761 ttttcagcttatttccataagctctccaggatagcttat 19429723  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 24169316 - 24169262
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||| |||||||||||||||| |||| |||||||| |||||| || ||||||    
T  24169316 tttttcaacttattttcataagctctccaagatagcttgtgaaaacattttatag 24169262  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 27321852 - 27321898
Alignment:
Q  182 agcttattttcataagctttccaggatagcttatgaaaatatcttat 228  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||    
T  27321852 agcttattgtcataagctctccaggatagcttttgaaaatagcttat 27321898  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 30377432 - 30377470
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagctta 214  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  30377432 tttttcagcttattttcataagctctccaagatagctta 30377470  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 54261094 - 54261132
Alignment:
Q  184 cttattttcataagctttccaggatagcttatgaaaata 222  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  54261094 cttattttcataagctttcaaagatagcttatgaaaata 54261132  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 7694028 - 7694081
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    |||||||||||||| ||||| || ||||||||| |||||||||| | |||||||    
T  7694028 ttttcagcttatttccataaactctccaggataacttatgaaaacagcttatag 7694081  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 44938803 - 44938734
Alignment:
Q  141 cttatgaaaacagctcatgacattctaataaaatatttttcagcttattttcataagctttccaggatag 210  Q
    ||||||||||||| | |||||||  | |||| || ||||| ||||||||| ||||||||||||| |||||    
T  44938803 cttatgaaaacaggttatgacatattcataagatgttttttagcttatttccataagctttccatgatag 44938734  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 51630163 - 51630110
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatag 230  Q
    ||||||||||||||||||||  | | || ||||||||||||||||| |||||||    
T  51630163 ttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatag 51630110  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 52754703 - 52754674
Alignment:
Q  124 gaaactgtttggaagagcttatgaaaacag 153  Q
    ||||||||||||||||||||||||||||||    
T  52754703 gaaactgtttggaagagcttatgaaaacag 52754674  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 5131268 - 5131304
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagctt 213  Q
    |||||||||||||| |||||||| |||||||||||||    
T  5131268 ttttcagcttatttccataagctctccaggatagctt 5131304  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 27721769 - 27721717
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    ||||||||||||||||  ||||| ||||||||| |||||||||| | ||||||    
T  27721769 ttttcagcttattttcgcaagctctccaggataacttatgaaaacagcttata 27721717  T

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Target: scaffold0221 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 22284 - 22229
Alignment:
Q  176 tttttcagcttattttcataagctttccaggatagcttatgaaaatatcttatagt 231  Q
    |||||||||||||||||||||| ||||||  ||||||||||| || | ||||||||    
T  22284 tttttcagcttattttcataagttttccaacatagcttatgataacagcttatagt 22229  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 159991 - 160043
Alignment:
Q  177 ttttcagcttattttcataagctttccaggatagcttatgaaaatatcttata 229  Q
    |||||||||||||| || ||||| |  ||||||||||||||||| ||||||||    
T  159991 ttttcagcttatttccacaagctctttaggatagcttatgaaaacatcttata 160043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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