View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_52 (Length: 287)
Name: NF19555_low_52
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 14528589 - 14528852
Alignment:
| Q |
10 |
gcagagaactaaactgggaaaaaagatatgaaattattattgggacagctgaaggattaatttacctgcatgagaactccaaaatcagaataattcataa |
109 |
Q |
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| T |
14528589 |
gcagagaactaaactgggaaaaaagatatgaaattattattgggacagctgaaggattagtttacctgcatgagaactccaaaatcagaataattcatag |
14528688 |
T |
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| Q |
110 |
agatataaaagccagcaacatcctattggattcaaagcttcgagctaaaattgcagattttggtttggccaggtcctttcaagaagacaagagccacata |
209 |
Q |
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| T |
14528689 |
agatataaaagccagcaacatcctattggattcaaagcttcgagctaaaattgcagattttggtttggccaggtcctttcaagaagacaagagccacata |
14528788 |
T |
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| Q |
210 |
agcacagctattccaggaactttgtaagtatct--taacacataatgtgtgttttggtatagag |
271 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14528789 |
agcacagctattgcaggaactttgtaagtatcttataacacataatgtgtgttttggtatagag |
14528852 |
T |
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