View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_59 (Length: 279)
Name: NF19555_low_59
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_59 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 31482165 - 31482418
Alignment:
| Q |
9 |
gaagaatatattgataaaaagaatggaaacaaagaggataatttctcattgttcaatgtatagtgtaaaactgatnnnnnnnnnnnnnttttaatgtact |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
31482165 |
gaagattatattgataaaaagaatggaaacaaagaggataatttctcattgttcaatgtatagtgtagaactgatacacacacacatattttaatgtact |
31482264 |
T |
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| Q |
109 |
cttaactaactagtactaagctctaaccgtaccacacacaatgacttgtattgcaagcaacaaatgttaactcctttttatctctttttatttattcatg |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| |
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| T |
31482265 |
cttaactaactagtactaagctctaactgtaccacacacaatgacttgtattgcaagcaacaaatgttaactcccttttatctc-ttttatttgttcatg |
31482363 |
T |
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| Q |
209 |
gtgcaatatccccccacaagttggagggtggtaaatgtctactatacccaacttg |
263 |
Q |
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| T |
31482364 |
gtgcaatatccccccacaagttggagggtggtaaatgtctactatacccaacttg |
31482418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 13133116 - 13133066
Alignment:
| Q |
213 |
aatatccccccacaagttggagggtggtaaatgtctactatacccaacttg |
263 |
Q |
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| T |
13133116 |
aatatccccccacaagttggagggtggtagatgtctaacatccccaacttg |
13133066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 26498397 - 26498347
Alignment:
| Q |
213 |
aatatccccccacaagttggagggtggtaaatgtctactatacccaacttg |
263 |
Q |
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| T |
26498397 |
aatatccccccacaagttggagggtggtagatgtctaacatccccaacttg |
26498347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 8838556 - 8838506
Alignment:
| Q |
213 |
aatatccccccacaagttggagggtggtaaatgtctactatacccaacttg |
263 |
Q |
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|||||||||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
8838556 |
aatatccccccacaagttggagggtggtaaatatctaacatccccaacttg |
8838506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 55312492 - 55312442
Alignment:
| Q |
213 |
aatatccccccacaagttggagggtggtaaatgtctactatacccaacttg |
263 |
Q |
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| T |
55312492 |
aatatccccccacaagttggagggtggtagatgtctaacatccccaacttg |
55312442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 19996687 - 19996636
Alignment:
| Q |
212 |
caatatccccccacaagttggagggtggtaaatgtctactatacccaacttg |
263 |
Q |
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| T |
19996687 |
caatatccccccacaagttggagggtggtatatatctaacatccccaacttg |
19996636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 14547 - 14491
Alignment:
| Q |
205 |
catggtgcaatatccccccacaagttggagggtggtaaatgtctactatacccaact |
261 |
Q |
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| T |
14547 |
catgatgcaatatccccccacaaattggatgttggtaaatgtacaccatacccaact |
14491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 37667625 - 37667589
Alignment:
| Q |
199 |
tttattcatggtgcaatatccccccacaagttggagg |
235 |
Q |
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| T |
37667625 |
tttattcatggtgcaatatccctcgacaagttggagg |
37667589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 23165216 - 23165248
Alignment:
| Q |
214 |
atatccccccacaagttggagggtggtaaatgt |
246 |
Q |
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| T |
23165216 |
atatccccccacaagttggaggttggtaaatgt |
23165248 |
T |
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