View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_low_60 (Length: 267)

Name: NF19555_low_60
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_low_60
NF19555_low_60
[»] chr5 (20 HSPs)
chr5 (18-179)||(43385026-43385187)
chr5 (18-179)||(20830251-20830411)
chr5 (25-142)||(36632383-36632500)
chr5 (18-142)||(19502383-19502507)
chr5 (18-142)||(26336764-26336888)
chr5 (18-142)||(32485944-32486068)
chr5 (18-130)||(30695367-30695478)
chr5 (25-142)||(40367570-40367688)
chr5 (18-97)||(7099374-7099455)
chr5 (18-97)||(7103943-7104024)
chr5 (18-97)||(12018807-12018888)
chr5 (18-97)||(12023365-12023446)
chr5 (18-97)||(16794184-16794265)
chr5 (18-97)||(16798745-16798826)
chr5 (205-253)||(43385213-43385261)
chr5 (35-97)||(37658814-37658878)
chr5 (35-97)||(37682118-37682182)
chr5 (64-100)||(5733078-5733114)
chr5 (18-66)||(20808675-20808723)
chr5 (18-86)||(40371750-40371818)
[»] chr8 (15 HSPs)
chr8 (18-142)||(33071992-33072116)
chr8 (18-142)||(42234653-42234777)
chr8 (18-139)||(28644636-28644757)
chr8 (18-130)||(30405792-30405903)
chr8 (18-130)||(30410301-30410412)
chr8 (25-139)||(38757072-38757186)
chr8 (18-97)||(197684-197765)
chr8 (18-97)||(202202-202283)
chr8 (18-97)||(312521-312602)
chr8 (18-97)||(317039-317120)
chr8 (18-97)||(43807485-43807566)
chr8 (18-97)||(43812044-43812125)
chr8 (64-118)||(27435173-27435227)
chr8 (64-100)||(1286739-1286775)
chr8 (64-100)||(1291445-1291481)
[»] chr4 (12 HSPs)
chr4 (18-142)||(10317022-10317146)
chr4 (18-139)||(31670165-31670286)
chr4 (18-142)||(27186220-27186344)
chr4 (25-144)||(50627899-50628018)
chr4 (18-130)||(53722081-53722192)
chr4 (18-141)||(8892580-8892703)
chr4 (35-142)||(43683633-43683740)
chr4 (40-142)||(35842843-35842945)
chr4 (18-97)||(3770918-3770999)
chr4 (18-97)||(44147099-44147180)
chr4 (18-97)||(44151634-44151715)
chr4 (27-97)||(53785930-53785999)
[»] chr7 (10 HSPs)
chr7 (18-139)||(22901230-22901351)
chr7 (25-142)||(7466482-7466599)
chr7 (18-142)||(733625-733749)
chr7 (18-140)||(47419539-47419661)
chr7 (18-130)||(27756920-27757031)
chr7 (18-130)||(27761471-27761582)
chr7 (19-142)||(35705710-35705833)
chr7 (18-97)||(7940083-7940164)
chr7 (18-97)||(7944636-7944717)
chr7 (22-94)||(13828109-13828181)
[»] chr1 (8 HSPs)
chr1 (18-142)||(43591780-43591904)
chr1 (18-130)||(39793905-39794016)
chr1 (18-139)||(16588440-16588561)
chr1 (25-139)||(26311591-26311705)
chr1 (25-139)||(26316082-26316196)
chr1 (64-100)||(41879941-41879977)
chr1 (64-97)||(17459045-17459078)
chr1 (64-100)||(36164377-36164413)
[»] chr3 (11 HSPs)
chr3 (18-168)||(11004337-11004486)
chr3 (18-144)||(43547799-43547925)
chr3 (18-142)||(9697662-9697786)
chr3 (18-130)||(21847185-21847296)
chr3 (18-130)||(21850275-21850386)
chr3 (18-141)||(9105349-9105472)
chr3 (20-145)||(43554645-43554770)
chr3 (18-97)||(54171924-54172005)
chr3 (18-97)||(54167344-54167425)
chr3 (22-94)||(755908-755981)
chr3 (18-97)||(38175790-38175868)
[»] chr6 (9 HSPs)
chr6 (18-130)||(17096246-17096357)
chr6 (22-142)||(17895682-17895802)
chr6 (18-130)||(8315475-8315586)
chr6 (18-117)||(14531771-14531870)
chr6 (18-130)||(8320014-8320125)
chr6 (18-130)||(27552082-27552193)
chr6 (35-142)||(17886807-17886914)
chr6 (18-118)||(17779989-17780089)
chr6 (35-130)||(27574710-27574804)
[»] chr2 (8 HSPs)
chr2 (18-139)||(12999426-12999547)
chr2 (18-130)||(8055466-8055577)
chr2 (18-118)||(8050913-8051013)
chr2 (25-130)||(6463410-6463514)
chr2 (18-97)||(36670579-36670660)
chr2 (18-97)||(36675127-36675208)
chr2 (25-104)||(13270982-13271061)
chr2 (18-97)||(34590289-34590366)
[»] scaffold0440 (2 HSPs)
scaffold0440 (18-97)||(3056-3137)
scaffold0440 (18-97)||(7581-7662)
[»] scaffold0044 (2 HSPs)
scaffold0044 (18-97)||(44865-44946)
scaffold0044 (18-97)||(49445-49526)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 43385026 - 43385187
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  43385026 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatata 43385125  T
Q  118 aagctacctccttgtatattttcatcatcatccaataacaactttcattttcaattctatca 179  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  43385126 aagctacctccttgaatatttccatcatcatccaataacaactttcattttcaattctatca 43385187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 20830411 - 20830251
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||| || ||||||||||||||||||||||||||||||||| ||| |||||||||||     
T  20830411 gttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttcaagcaacttaactagacattgtatat- 20830313  T
Q  118 aagctacctccttgtatattttcatcatcatccaataacaactttca-ttttcaattctatca 179  Q
    ||||||||| ||| |||||||||||||  || ||||||||| | ||| |||||||||||||||    
T  20830312 aagctacctacttatatattttcatcagtat-caataacaattctcacttttcaattctatca 20830251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 36632383 - 36632500
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctac 124  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  36632383 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatat-aagctac 36632481  T
Q  125 ctcc-ttgtatattttcat 142  Q
    |||| ||||||||||||||    
T  36632482 ctcctttgtatattttcat 36632500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 19502383 - 19502507
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||| |||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||     
T  19502383 gttatgaagtttgttacaagtttgttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatat- 19502481  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||||||||| || |||||||||||    
T  19502482 aagctacctcctttatatattttcat 19502507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 26336888 - 26336764
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||| |||||||||| |||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||     
T  26336888 gttatgatgtttgttacatgtttgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatat- 26336790  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||||||||| ||||||||||||||    
T  26336789 aagctacctcctttgtatattttcat 26336764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 32486068 - 32485944
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |  |||||||| |||||||||||     
T  32486068 gttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatat- 32485970  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||||||||| || |||||||||||    
T  32485969 aagctacctcctttatatattttcat 32485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 30695367 - 30695478
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  30695367 gttatgaagtttgttacaagtttgttagaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 30695465  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  30695466 aagctacctcctt 30695478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 40367688 - 40367570
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagc-aacttagctaaacattgtatataaagcta 123  Q
    |||||||||||||||||||||| | ||| | |||| |||||| ||||||||||||||||||||||||||| ||||| | || | ||||||||| ||||||    
T  40367688 agtttgttacaagtttgttagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatat-aagcta 40367590  T
Q  124 cctcc-ttgtatattttcat 142  Q
    ||||| ||||| ||||||||    
T  40367589 cctcctttgtacattttcat 40367570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 7099455 - 7099374
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  7099455 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 7104024 - 7103943
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  7104024 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 12018807 - 12018888
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  12018807 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 12023365 - 12023446
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  12023365 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 16794184 - 16794265
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  16794184 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 16798745 - 16798826
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  16798745 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 43385213 - 43385261
Alignment:
Q  205 aaatcactaaactacaaaaccctaagaaaccaaatgcttccattctctg 253  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43385213 aaatcacaaaactacaaaaccctaagaaaccaaatgcttccattctctg 43385261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 37658814 - 37658878
Alignment:
Q  35 aagtttgttagaagttagcaaataaaatc--tagggtttgttacattgcttgtgcttcaagcaac 97  Q
    |||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  37658814 aagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 37682118 - 37682182
Alignment:
Q  35 aagtttgttagaagttagcaaataaaatc--tagggtttgttacattgcttgtgcttcaagcaac 97  Q
    |||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  37682118 aagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 5733078 - 5733114
Alignment:
Q  64 tagggtttgttacattgcttgtgcttcaagcaactta 100  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5733078 tagggtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 20808723 - 20808675
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctag 66  Q
    ||||||||||| ||||||||||||||||| |||| ||||||| ||||||    
T  20808723 gttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 40371818 - 40371750
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtg 86  Q
    ||||||||| ||||||||||||||||||| | ||| | |||| |||||| |||| |||||||| |||||    
T  40371818 gttatgaagattgttacaagtttgttagaggctagtagataagatctagagtttattacattgtttgtg 40371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 33071992 - 33072116
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    |||||||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  33071992 gttatgaagtttgttacaagtttgttggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatat- 33072090  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||||||||| ||||||||||||||    
T  33072091 aagctacctcctttgtatattttcat 33072116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 42234777 - 42234653
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42234777 gttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatata 42234678  T
Q  118 aagctacc-tccttgtatattttcat 142  Q
    || ||||| || ||||||||||||||    
T  42234677 aa-ctaccttctttgtatattttcat 42234653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 28644636 - 28644757
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||     
T  28644636 gttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatat- 28644734  T
Q  118 aagctacctcc-ttgtatatttt 139  Q
    ||||||||||| |||||||||||    
T  28644735 aagctacctcctttgtatatttt 28644757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 30405903 - 30405792
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||| | |||| ||||||  ||||||||||||||||| ||||||||||| |||||| | |||||||||     
T  30405903 gttatgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatat- 30405805  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  30405804 aagctacctcctt 30405792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 30410412 - 30410301
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||| | |||| ||||||  ||||||||||||||||| ||||||||||| |||||| | |||||||||     
T  30410412 gttatgaagtttgttacaagtttgttagaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatat- 30410314  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  30410313 aagctacctcctt 30410301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 38757072 - 38757186
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctac 124  Q
    |||||||||||||||||||||| ||||| | |||| |||||| ||||||||||||||||||| |||||||||| |||| | | ||||||||| |||||||    
T  38757072 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatat-aagctac 38757170  T
Q  125 ctcc-ttgtatatttt 139  Q
    |||| |||||||||||    
T  38757171 ctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 197765 - 197684
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  197765 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 202283 - 202202
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  202283 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 312602 - 312521
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  312602 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 317120 - 317039
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  317120 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 43807566 - 43807485
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  43807566 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 43812125 - 43812044
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  43812125 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 27435227 - 27435173
Alignment:
Q  64 tagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataa 118  Q
    ||||||||||||||| |||||||||||||||||| ||  || | |||||||||||    
T  27435227 tagggtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataa 27435173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 1286739 - 1286775
Alignment:
Q  64 tagggtttgttacattgcttgtgcttcaagcaactta 100  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  1286739 tagggtttgttactttgcttgtacttcaagcaactta 1286775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 1291445 - 1291481
Alignment:
Q  64 tagggtttgttacattgcttgtgcttcaagcaactta 100  Q
    |||||||||||||  ||||||||||||||||||||||    
T  1291445 tagggtttgttactctgcttgtgcttcaagcaactta 1291481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 10317146 - 10317022
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||     
T  10317146 gttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatat- 10317048  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||||||||| ||||||||||||||    
T  10317047 aagctacctcctttgtatattttcat 10317022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 31670165 - 31670286
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||     
T  31670165 gttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatat- 31670263  T
Q  118 aagctacctcc-ttgtatatttt 139  Q
    ||||||||||| |||||||||||    
T  31670264 aagctacctcctttgtatatttt 31670286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 27186220 - 27186344
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||     
T  27186220 gttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatat- 27186318  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||| ||||| ||||||||||||||    
T  27186319 aagctgcctcctttgtatattttcat 27186344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 50628018 - 50627899
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctac 124  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  50628018 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatat-aagctac 50627920  T
Q  125 ctcc-ttgtatattttcatca 144  Q
    |||| || |||||||||||||    
T  50627919 ctcctttatatattttcatca 50627899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 53722081 - 53722192
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| | ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  53722081 gttatgaagtttgttacaagtttgttagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatat- 53722179  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  53722180 aagctacctcctt 53722192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 8892703 - 8892580
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||| |||||||||  ||||||||||| || ||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||     
T  8892703 gttatgaagtttgttacaaatttgttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatat- 8892605  T
Q  118 aagctacctcc-ttgtatattttca 141  Q
    ||||||||||| |||||||||||||    
T  8892604 aagctacctcctttgtatattttca 8892580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 43683740 - 43683633
Alignment:
Q  35 aagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctacctcc-ttgta 133  Q
    |||||||||||| |||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||    
T  43683740 aagtttgttagaggttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatat-aagctacatcctttgta 43683642  T
Q  134 tattttcat 142  Q
    |||||||||    
T  43683641 tattttcat 43683633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 35842843 - 35842945
Alignment:
Q  40 tgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctacctcc-ttgtatattt 138  Q
    ||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaa-ctacctcctttgtatattt 35842941  T
Q  139 tcat 142  Q
    ||||    
T  35842942 tcat 35842945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 3770918 - 3770999
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  3770918 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 44147099 - 44147180
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  44147099 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 44151634 - 44151715
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  44151634 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 53785930 - 53785999
Alignment:
Q  27 tttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    |||||||||||||||||||||  ||||  ||| | | ||||||||||||||| ||||||||||||||||||    
T  53785930 tttgttacaagtttgttagaaactagcttatatagt-tagggtttgttacatagcttgtgcttcaagcaac 53785999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 22901230 - 22901351
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  22901230 gttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatat- 22901328  T
Q  118 aagctacctcc-ttgtatatttt 139  Q
    ||||||||||| |||||||||||    
T  22901329 aagctacctcctttgtatatttt 22901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 7466599 - 7466482
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctac 124  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  7466599 agtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatat-aagctac 7466501  T
Q  125 ctcc-ttgtatattttcat 142  Q
    |||| ||||||||||||||    
T  7466500 ctcctttgtatattttcat 7466482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 733749 - 733625
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    |||||||| |||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||     
T  733749 gttatgaaatttgttacaattttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatat- 733651  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||||||||| ||||||| ||||||    
T  733650 aagctacctcctttgtatactttcat 733625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 47419661 - 47419539
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||| ||||| ||||||| |||| |||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||     
T  47419661 gttatgaagtttgttacaagtttcttagaggttagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatat- 47419563  T
Q  118 aagctacctcc-ttgtatattttc 140  Q
    ||||||||||| ||||||||||||    
T  47419562 aagctacctcctttgtatattttc 47419539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 27756920 - 27757031
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||| | | |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  27756920 gttatgaagtttgttacaagtttgttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 27757018  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  27757019 aagctacctcctt 27757031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 27761471 - 27761582
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||| | | |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  27761471 gttatgaagtttgttacaagtttgttagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 27761569  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  27761570 aagctacctcctt 27761582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 35705710 - 35705833
Alignment:
Q  19 ttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataa 118  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||| ||||||||||| |    
T  35705710 ttatggagtttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatat-a 35705807  T
Q  119 agctacc--tccttgtatattttcat 142  Q
    |||||||  || ||||||||||||||    
T  35705808 agctacctttctttgtatattttcat 35705833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 7940164 - 7940083
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  7940164 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 7944717 - 7944636
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  7944717 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 13828181 - 13828109
Alignment:
Q  22 tgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagc 94  Q
    |||||||||||||||||||||||||   || | ||||| |  |||||| ||||||||||||||||||||||||    
T  13828181 tgaagtttgttacaagtttgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagc 13828109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 43591904 - 43591780
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||     
T  43591904 gttatgaagtttgttacaatattgttagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatat- 43591806  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||||||||| ||||||||||||||    
T  43591805 aagctacctcctttgtatattttcat 43591780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 39793905 - 39794016
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  39793905 gttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 39794003  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  39794004 aagctacctcctt 39794016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 16588561 - 16588440
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| |||| || |||| |||||| ||||||||||||||||||| || |||||||||||||| |||||||||||     
T  16588561 gttatgaagtttgttacaagtttgttagaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatat- 16588463  T
Q  118 aagctacctcc-ttgtatatttt 139  Q
    ||||||||||| |||||||||||    
T  16588462 aagctacctcctttgtatatttt 16588440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 26311591 - 26311705
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctac 124  Q
    |||||||||||||||||||||| ||||| | |||| |||||| |||||||||||||||||||||||||||||| |||||| | ||||||||| |||||||    
T  26311591 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatat-aagctac 26311689  T
Q  125 ctcc-ttgtatatttt 139  Q
     ||| |||||||||||    
T  26311690 ttcctttgtatatttt 26311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 26316082 - 26316196
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctac 124  Q
    |||||||||||||||||||||| ||||| | |||| |||||| |||||||||||||||||||||||||||||| |||||| | ||||||||| |||||||    
T  26316082 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatat-aagctac 26316180  T
Q  125 ctcc-ttgtatatttt 139  Q
     ||| |||||||||||    
T  26316181 ttcctttgtatatttt 26316196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 41879941 - 41879977
Alignment:
Q  64 tagggtttgttacattgcttgtgcttcaagcaactta 100  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41879941 tagggtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 17459078 - 17459045
Alignment:
Q  64 tagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||| ||||||||||||||||||    
T  17459078 tagggtttgttacatagcttgtgcttcaagcaac 17459045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 36164413 - 36164377
Alignment:
Q  64 tagggtttgttacattgcttgtgcttcaagcaactta 100  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  36164413 tagggtttgttactttgcttgtgctttaagcaactta 36164377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 11004486 - 11004337
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||     
T  11004486 gttatgaagattgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatat- 11004388  T
Q  118 aagctacctcc-ttgtatattttcatcatcatccaataacaactttcatttt 168  Q
    ||||||||||| |||||||||||||| |  || ||||||||| |||||||||    
T  11004387 aagctacctcctttgtatattttcataagtat-caataacaattttcatttt 11004337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 43547799 - 43547925
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||     
T  43547799 gttatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatat- 43547897  T
Q  118 aagctacctcc-ttgtatattttcatca 144  Q
    |||||| |||| ||||||||||||||||    
T  43547898 aagctatctcctttgtatattttcatca 43547925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 9697662 - 9697786
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||     
T  9697662 gttatgaagtttgttacaagtttgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatat- 9697760  T
Q  118 aagctacctcc-ttgtatattttcat 142  Q
    ||||| ||||| ||||||||||||||    
T  9697761 aagctgcctcctttgtatattttcat 9697786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 21847185 - 21847296
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  21847185 gttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 21847283  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  21847284 aagctacctcctt 21847296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 21850275 - 21850386
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  21850275 gttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 21850373  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  21850374 aagctacctcctt 21850386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 9105349 - 9105472
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    |||||||||| |||||||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||| || ||| |||||||||||     
T  9105349 gttatgaagtatgttacaagtttgttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatat- 9105447  T
Q  118 aagctacctcc-ttgtatattttca 141  Q
     |||||||||| |||||||||||||    
T  9105448 gagctacctcctttgtatattttca 9105472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 43554645 - 43554770
Alignment:
Q  20 tatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaa 119  Q
    ||||||||||||||||||||||||||| |||| ||||||| |||||| |||| ||||||||||| || ||||||||||||||  | |||||||||||  |    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatat-ga 43554743  T
Q  120 gctacctc-cttgtatattttcatcat 145  Q
    ||||||||  ||||||||||| |||||    
T  43554744 gctacctcttttgtatatttttatcat 43554770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 54172005 - 54171924
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  54172005 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 54167425 - 54167344
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataa--aatctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| |||| |||||||      ||| ||||||||||||||||||||||||||||||    
T  54167425 gttatgaagtttgttacaagtttgttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 755908 - 755981
Alignment:
Q  22 tgaagtttgttacaagtttgttagaagttagcaaataaaatct-agggtttgttacattgcttgtgcttcaagc 94  Q
    |||||||||||||||||||||||||   || | |||||||  | ||||||||||||||||||||||||||||||    
T  755908 tgaagtttgttacaagtttgttagagtgtaactaataaaaggttagggtttgttacattgcttgtgcttcaagc 755981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 38175868 - 38175790
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    |||||||| ||||||||||||| ||||||  |||||  |||| || ||||||||||||| | |||||| |||||||||||    
T  38175868 gttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 17096357 - 17096246
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  17096357 gttatgaagtttgttacaagtttgttagaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatat- 17096259  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  17096258 aagctacctcctt 17096246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 17895802 - 17895682
Alignment:
Q  22 tgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagc 121  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  17895802 tgaagtttgttacaagtttgttagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatat-aagc 17895704  T
Q  122 tacctcc-ttgtatattttcat 142  Q
    ||||||| |||||| |||||||    
T  17895703 tacctcctttgtattttttcat 17895682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 8315586 - 8315475
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  8315586 gttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 8315488  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  8315487 aagctacctcctt 8315475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 14531870 - 14531771
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    |||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  14531870 gttatgaagtttgttacaggtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatata 14531771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 8320125 - 8320014
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||| | |||| |||||| |||||||||||||||||||||||||| |||||||||| | |||||||||     
T  8320125 gttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatat- 8320027  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  8320026 aagctacctcctt 8320014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 27552193 - 27552082
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    |||||||||||||||||| |||||||| | ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  27552193 gttatgaagtttgttacaggtttgttaaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 27552095  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  27552094 aagctacctcctt 27552082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 17886914 - 17886807
Alignment:
Q  35 aagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctacctcc-ttgta 133  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||    
T  17886914 aagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatat-aagctacctcctttgta 17886816  T
Q  134 tattttcat 142  Q
    | |||||||    
T  17886815 ttttttcat 17886807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 17779989 - 17780089
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    |||||||||||||||| |||||||||||| | ||| | |||| || ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  17779989 gttatgaagtttgttaaaagtttgttagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatata 17780088  T
Q  118 a 118  Q
    |    
T  17780089 a 17780089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 27574804 - 27574710
Alignment:
Q  35 aagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctacctcctt 130  Q
    |||||||||||| ||||||| |||| |||||  ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  27574804 aagtttgttagaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat-aagctacctcctt 27574710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 12999547 - 12999426
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||     
T  12999547 gttatgaagtttgttacaagtttgttagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatat- 12999449  T
Q  118 aagctacctcc-ttgtatatttt 139  Q
    |||||| |||| |||||||||||    
T  12999448 aagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 8055466 - 8055577
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||| ||||||||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||     
T  8055466 gttatgaagtttgttgcaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat- 8055564  T
Q  118 aagctacctcctt 130  Q
    |||||||||||||    
T  8055565 aagctacctcctt 8055577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 8050913 - 8051013
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatata 117  Q
    ||||||||||||||||||||||||||||| ||||| | |||| |||||| |||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  8050913 gttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatata 8051012  T
Q  118 a 118  Q
    |    
T  8051013 a 8051013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 6463514 - 6463410
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagctaaacattgtatataaagctac 124  Q
    |||||||||||||||||||||| ||||| | |||| |||||| ||||||||||||  |||||||||||||||| |||||| | ||||||||| |||||||    
T  6463514 agtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatat-aagctac 6463416  T
Q  125 ctcctt 130  Q
    ||||||    
T  6463415 ctcctt 6463410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 36670579 - 36670660
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  36670579 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 36675127 - 36675208
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  36675127 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 13271061 - 13270982
Alignment:
Q  25 agtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaacttagcta 104  Q
    ||||||||| |||||||||||| ||||| |||||| |||||  ||||||||||||| || ||||||||||||||||||||    
T  13271061 agtttgttataagtttgttagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagcta 13270982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 34590289 - 34590366
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaatctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    |||||||| ||||||||||||||||||||  |||||| ||| | | |||||||||||| || |||||||||| |||||||    
T  34590289 gttatgaa-tttgttacaagtttgttagagattagcatatagagt-tagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 3056 - 3137
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  3056 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 7581 - 7662
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||| ||||||||||    
T  7581 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 44946 - 44865
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  44946 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 49526 - 49445
Alignment:
Q  18 gttatgaagtttgttacaagtttgttagaagttagcaaataaaat--ctagggtttgttacattgcttgtgcttcaagcaac 97  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |   ||| ||||||||||||||||||||||||||||||    
T  49526 gttatgaagtttgttacaagtttgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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