View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_64 (Length: 256)
Name: NF19555_low_64
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_64 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 33016800 - 33017034
Alignment:
| Q |
18 |
atgggggataagatattcttgtctctcattaaattattagacaaatttttgtccaagaactatcttaagtgctaaaatgtcatcttattttctaaacaaa |
117 |
Q |
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| T |
33016800 |
atgggggataagataatcttgtctctcattaaattattagagaaatttttgtccaagaacgatcttaagtactaaaatgtcatcttattttctaatcaaa |
33016899 |
T |
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| Q |
118 |
caatactctcctaccctccctccctcccttctcattgtttcctattaatatttacattcatnnnnnnnttgtagtaaatttcatcttattttgtttgtag |
217 |
Q |
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| T |
33016900 |
caatactct----ccctcccgccctcccttctcattgtttcctattaatatttacattcataaaaaaattgtagtaaatttcatcttattttgtttatag |
33016995 |
T |
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| Q |
218 |
tgtccattgtccactaaacatcgtagtaaataaaaagtt |
256 |
Q |
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| T |
33016996 |
tgtccattgtccactaaacatcgtagtaaataaaaagtt |
33017034 |
T |
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