View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_low_66 (Length: 251)

Name: NF19555_low_66
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_low_66
NF19555_low_66
[»] chr3 (2 HSPs)
chr3 (15-233)||(48228373-48228590)
chr3 (28-69)||(29862403-29862444)
[»] chr2 (3 HSPs)
chr2 (32-99)||(8588694-8588762)
chr2 (25-70)||(19161286-19161331)
chr2 (25-99)||(9684845-9684920)
[»] chr8 (3 HSPs)
chr8 (149-215)||(4700383-4700449)
chr8 (18-99)||(139897-139979)
chr8 (149-221)||(24125770-24125842)
[»] chr6 (3 HSPs)
chr6 (149-221)||(10402471-10402543)
chr6 (32-99)||(34305106-34305174)
chr6 (149-221)||(34305240-34305312)
[»] chr1 (5 HSPs)
chr1 (149-221)||(7435089-7435161)
chr1 (28-99)||(38732188-38732260)
chr1 (25-99)||(19036029-19036104)
chr1 (39-100)||(972268-972329)
chr1 (149-233)||(7794198-7794282)
[»] chr7 (1 HSPs)
chr7 (154-221)||(47679867-47679934)
[»] chr4 (3 HSPs)
chr4 (32-69)||(23809160-23809197)
chr4 (15-99)||(53171090-53171175)
chr4 (149-233)||(53171241-53171325)
[»] scaffold0186 (1 HSPs)
scaffold0186 (32-99)||(20334-20402)
[»] chr5 (2 HSPs)
chr5 (149-221)||(15291315-15291387)
chr5 (25-69)||(15291484-15291528)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 48228590 - 48228373
Alignment:
Q  15 tgttttctagctcgtgatcatgtcaaacttcacttctatatcttgaacatttttattcaatggacactcgccaaaacatgttgtgtccttgctaataaaa 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48228590 tgttttctagctcgtgattatgtcaaacttcacttctatatcttgaacatttttattcaatggacactcgccaaaacatgttgtgtccttgctaataaaa 48228491  T
Q  115 ctgctaataccaaaattttgaattgtaccatttgagactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatga 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48228490 ctgctaataccaaaattttgaattgtacca-ttgagactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatga 48228392  T
Q  215 ttttgtaacacctaagatt 233  Q
    |||| ||||||||||||||    
T  48228391 ttttataacacctaagatt 48228373  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 29862403 - 29862444
Alignment:
Q  28 gtgatcatgtcaaacttcacttctatatcttgaacattttta 69  Q
    ||||||||||||||||| ||||| |||||||||||| |||||    
T  29862403 gtgatcatgtcaaacttaacttccatatcttgaacactttta 29862444  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 8588694 - 8588762
Alignment:
Q  32 tcatgtcaaacttcacttctatatcttgaacatttttatt-caatggacactcgccaaaacatgttgtg 99  Q
    ||||||||||||| ||||| |||||||||||| |||||||  || ||||||||||||||||||||||||    
T  8588694 tcatgtcaaacttgacttccatatcttgaacacttttattaaaaaggacactcgccaaaacatgttgtg 8588762  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 19161331 - 19161286
Alignment:
Q  25 ctcgtgatcatgtcaaacttcacttctatatcttgaacatttttat 70  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  19161331 ctcgtgatcatgtcaaacttaacttccatatcttgaacatttttat 19161286  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 9684920 - 9684845
Alignment:
Q  25 ctcgtgatcatgtcaaacttcacttctatatcttgaacatttttattcaatgga-cactcgccaaaacatgttgtg 99  Q
    |||||| ||||||||||||| ||||| ||||| |||||| ||||||| ||  || ||||| |||||||||||||||    
T  9684920 ctcgtggtcatgtcaaacttaacttccatatcctgaacacttttattaaaaagagcactcaccaaaacatgttgtg 9684845  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 4700383 - 4700449
Alignment:
Q  149 agactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgat 215  Q
    |||| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||||| ||||||    
T  4700383 agaccatccaaagcattgtcaaaatcagagttcataccacttatcccactatctctcaaagtatgat 4700449  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 139897 - 139979
Alignment:
Q  18 tttctagctcgtgatcatgtcaaacttcacttctatatcttgaacattttta-ttcaatggacactcgccaaaacatgttgtg 99  Q
    |||||| |||||| ||||||||||||||||||| | ||| | ||||||| || |  || |||||||| |||||||||||||||    
T  139897 tttctatctcgtggtcatgtcaaacttcacttccacatccttaacatttctactaaaaaggacactcaccaaaacatgttgtg 139979  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 24125770 - 24125842
Alignment:
Q  149 agactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgattttgta 221  Q
    |||| ||||||| |||| |||||||  |||||||||| || ||||||| | | |||||||||||||| |||||    
T  24125770 agaccatccaaagcattttcaaaattcgagtccataccatatatcccattgtctctcaaaatatgatcttgta 24125842  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 10402471 - 10402543
Alignment:
Q  149 agactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgattttgta 221  Q
    |||| ||||||| |||| |||||||| |||||||||| |  ||||||||||| |||||||||||||| |||||    
T  10402471 agaccatccaaagcattatcaaaatccgagtccataccacatatcccactatctctcaaaatatgatcttgta 10402543  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 34305106 - 34305174
Alignment:
Q  32 tcatgtcaaacttcacttctatatcttgaacatttttattcaatgga-cactcgccaaaacatgttgtg 99  Q
    ||||||||||||| ||||| |||||||||||| ||||| | ||  || |||||||||||||||||||||    
T  34305106 tcatgtcaaacttaacttccatatcttgaacaattttactaaaaagagcactcgccaaaacatgttgtg 34305174  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 34305240 - 34305312
Alignment:
Q  149 agactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgattttgta 221  Q
    |||| ||||||| |||| |||||||| |||||||||| |  ||||||||| | |||||||||||||| |||||    
T  34305240 agaccatccaaagcattatcaaaatctgagtccataccacatatcccactgtctctcaaaatatgatcttgta 34305312  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 7435089 - 7435161
Alignment:
Q  149 agactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgattttgta 221  Q
    |||| ||||||||||| ||||||||||||||||||   | ||||| |||| | |||||||||||||| |||||    
T  7435089 agaccatccaaaacatcgtcaaaatcagagtccatgttagttatctcactgtctctcaaaatatgatcttgta 7435161  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 38732188 - 38732260
Alignment:
Q  28 gtgatcatgtcaaacttcacttctatatcttgaacattttta-ttcaatggacactcgccaaaacatgttgtg 99  Q
    ||||||||||||||||| ||||| |||||||||||| ||||| |  |||||||| ||| |||||| |||||||    
T  38732188 gtgatcatgtcaaacttaacttccatatcttgaacacttttactaaaatggacaatcgtcaaaacttgttgtg 38732260  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 19036029 - 19036104
Alignment:
Q  25 ctcgtgatcatgtcaaacttcacttctatatcttgaacatttttattcaatgga-cactcgccaaaacatgttgtg 99  Q
    |||||| ||||||||||||| ||||| ||||| |||||| ||||| | ||  || |||||||||||||||||||||    
T  19036029 ctcgtggtcatgtcaaacttaacttccatatcctgaacacttttactaaaaagagcactcgccaaaacatgttgtg 19036104  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 972268 - 972329
Alignment:
Q  39 aaacttcacttctatatcttgaacatttttattcaatggacactcgccaaaacatgttgtgt 100  Q
    |||||| ||||  |||||||||||| ||| | | || |||||||||||||||||||||||||    
T  972268 aaacttaactttcatatcttgaacactttcactaaaaggacactcgccaaaacatgttgtgt 972329  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 7794282 - 7794198
Alignment:
Q  149 agactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgattttgtaacacctaagatt 233  Q
    |||| |||||||||||| ||||||||  |||| |||  |  ||||||||||| ||||| |||||||| ||||| |||| ||||||    
T  7794282 agaccatccaaaacattatcaaaatccaagtctatatcacatatcccactatctctcataatatgatcttgtagcacccaagatt 7794198  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 47679867 - 47679934
Alignment:
Q  154 atccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgattttgta 221  Q
    |||||||||||| |||||||| |||||||||| |  |||| |||| | |||||||||||||| |||||    
T  47679867 atccaaaacattatcaaaatctgagtccatacgacatatcacactgtctctcaaaatatgatcttgta 47679934  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 23809197 - 23809160
Alignment:
Q  32 tcatgtcaaacttcacttctatatcttgaacattttta 69  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  23809197 tcatgtcaaatttcacttccatatcttgaacattttta 23809160  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 53171090 - 53171175
Alignment:
Q  15 tgttttctagctcgtgatcatgtcaaacttcacttctatatcttgaacatttttattcaatgga-cactcgccaaaacatgttgtg 99  Q
    ||||||||  |||||| | ||||||||||| ||||| |||| ||||||| ||||| | ||  || |||||||||||||||||||||    
T  53171090 tgttttctttctcgtggttatgtcaaacttaacttccatattttgaacacttttactaaaaagagcactcgccaaaacatgttgtg 53171175  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 53171241 - 53171325
Alignment:
Q  149 agactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgattttgtaacacctaagatt 233  Q
    |||| |||||||| ||| |||||||| |||| ||| | |  || |||||| | |||||||||||||| ||||| |||||||||||    
T  53171241 agacaatccaaaatattatcaaaatccgagttcatgccacataacccactgtctctcaaaatatgatcttgtagcacctaagatt 53171325  T

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Target: scaffold0186 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 20334 - 20402
Alignment:
Q  32 tcatgtcaaacttcacttctatatcttgaacatttttatt-caatggacactcgccaaaacatgttgtg 99  Q
    ||||||||||||| ||||  |||||||||||| |||||||  || || || ||||||||||||||||||    
T  20334 tcatgtcaaacttaactttcatatcttgaacacttttattaaaaagggcattcgccaaaacatgttgtg 20402  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 15291387 - 15291315
Alignment:
Q  149 agactatccaaaacattgtcaaaatcagagtccatacaatttatcccactatttctcaaaatatgattttgta 221  Q
    |||| |||||||||||| || ||||| |||||||||| || |||| || | | |||||||||||||| |||||    
T  15291387 agaccatccaaaacattatcgaaatccgagtccataccatatatctcattgtctctcaaaatatgatcttgta 15291315  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 15291528 - 15291484
Alignment:
Q  25 ctcgtgatcatgtcaaacttcacttctatatcttgaacattttta 69  Q
    |||||| ||||||||||||| ||||| |||||||||||| |||||    
T  15291528 ctcgtggtcatgtcaaacttaacttccatatcttgaacactttta 15291484  T

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