View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19555_low_7 (Length: 591)

Name: NF19555_low_7
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19555_low_7
NF19555_low_7
[»] chr8 (2 HSPs)
chr8 (24-174)||(12933811-12933961)
chr8 (114-151)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (24-174)||(14177081-14177231)
chr4 (24-174)||(28608644-28608794)
chr4 (113-166)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (144-181)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (144-181)||(796698-796735)
chr6 (144-181)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (144-181)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 12933961 - 12933811
Alignment:
Q  24 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 122  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  12933961 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 12933863  T
Q  123 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 174  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933862 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  114 ggttgctccatataaatctcctcttccaaatctccatg 151  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  24 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 122  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  123 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 174  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 28608644 - 28608794
Alignment:
Q  24 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 122  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  ||    
T  28608644 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaacc 28608742  T
Q  123 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 174  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608743 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  113 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 166  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  144 tctccatgaagaaatgcagttttcacatccaactgctc 181  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  144 tctccatgaagaaatgcagttttcacatccaactgctc 181  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  144 tctccatgaagaaatgcagttttcacatccaactgctc 181  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  144 tctccatgaagaaatgcagttttcacatccaactgctc 181  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University