View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_74 (Length: 232)
Name: NF19555_low_74
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 40555551 - 40555351
Alignment:
| Q |
19 |
atttggaagatagcaaccagttggtgaaatttgagagtgtggattcatctgctctgtaataattttgagtgaattcaagcaaatctgaccatgtaaaatc |
118 |
Q |
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| T |
40555551 |
atttggaagatagcaaccagttggtgaaatttgagagtgtggattcatctgctctgtaataattttgagtgaattcaagcaaatctgaccatgtaaaatc |
40555452 |
T |
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| Q |
119 |
tggatactgtttggtcccatctctgctaataatatcatgagggggtctcaccaccttatcttctttgggacatagaaagaaagccaacgaccttctctgc |
218 |
Q |
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| T |
40555451 |
tggatactgtttggtcccatctctgctaataatatcatgagggggtctcaccaccttatcttctttgggacatagaaagaaagccaacgaccttctctgc |
40555352 |
T |
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| Q |
219 |
t |
219 |
Q |
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| T |
40555351 |
t |
40555351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 40581971 - 40581811
Alignment:
| Q |
20 |
tttggaagatagcaaccagttggtgaaatttgagagtgtggattcatctgctctgtaataattttgagtgaattcaagcaaatctgaccatgtaaaatct |
119 |
Q |
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| T |
40581971 |
tttggatgatagcaaccagttggtgaaatttgag--tgtagcttcatctggtatacaatatttttaagtgaattcaagcaaatctgaccatgtgaaatct |
40581874 |
T |
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| Q |
120 |
ggatactgtttggtcccatctctgc---taataatatcatgagggggtctcaccaccttatct |
179 |
Q |
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| T |
40581873 |
agatactgtttggacccatccctgcgaataataatatcttgagggggtctcaccaccttatct |
40581811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 36445826 - 36445630
Alignment:
| Q |
20 |
tttggaagatagcaaccagttggtgaaatttgagagtgtggattcatctgctctgtaataattttgagtgaattcaagcaaatctgaccatgtaaaatct |
119 |
Q |
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|||||||||||| ||||| |||||||||||| ||||| | ||| || |||||||| | |||||| ||||||| |||||| | ||||||||| ||||| |
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| T |
36445826 |
tttggaagatagtaaccacttggtgaaattttgcagtgtagcttcgtcagctctgtagtgattttgtgtgaattgaagcaattgtgaccatgtgaaatca |
36445727 |
T |
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| Q |
120 |
ggatactgtttggtcccatctctgctaataatatcatgagggggtctcaccaccttatcttctttgggacatagaaagaaagccaacgaccttctct |
216 |
Q |
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| T |
36445726 |
ggatattgttttgtcccatctctactcacaatatcttgtgagggtctcaccattttgtcttcttttgggcacagaaagaatgctaaggacctcctct |
36445630 |
T |
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