View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19555_low_8 (Length: 586)
Name: NF19555_low_8
Description: NF19555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19555_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 130 - 408
Target Start/End: Original strand, 10887786 - 10888064
Alignment:
| Q |
130 |
aacctataaatgtatctatcactggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcact |
229 |
Q |
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| T |
10887786 |
aacctataaatgtatctatcactggaatctattcctatttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcact |
10887885 |
T |
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| Q |
230 |
atccaatgcttctttgcttctactcatactttgttgtccagtgatagactaataattaaaatatataatcttataacaattatgacataacaagtttcag |
329 |
Q |
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| T |
10887886 |
atccaattcttctatgcttctactcatactttgttgtccagtgatagactaataattaaaatatataatcttataacaattatgacataacaagtttcag |
10887985 |
T |
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| Q |
330 |
atagttatggaatttcaaatatttcattctatattgtagatgacttcaaatatttatttttatggaagagttcgtttta |
408 |
Q |
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| T |
10887986 |
atagttatggaatttcaaatatttcattctatattgtagatgacttcaaatatttatttttatggaagagttcgtttta |
10888064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 10887644 - 10887768
Alignment:
| Q |
11 |
agaaaatcatccagaggaccaagcccttattccaattgaaaaggtacttcatacaacttggtctatcaggcagttaaaaacagtttcacgtgccccagat |
110 |
Q |
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| T |
10887644 |
agaagatcatccagaggaccaagcccttattccaattgaaaaggtacttcatacaacttggtgtataaggcagttaaaaacagtttcacgtgccccagat |
10887743 |
T |
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| Q |
111 |
aataatacaaagtatacctaaccta |
135 |
Q |
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| T |
10887744 |
aataatacaaagtatacctaaccta |
10887768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 417 - 572
Target Start/End: Original strand, 10888112 - 10888267
Alignment:
| Q |
417 |
ctatccagatccccagtatggatatgttagcagttgatataggagacacctcggtcaagtgggatcgatggtttagcatattgcaatttgacaaactgca |
516 |
Q |
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| T |
10888112 |
ctatccagatccccagtatggataagttaatagttgttattggagacaccttggtcaggtggaatcgatggtctagcaaattgcaatttgacaaactgca |
10888211 |
T |
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| Q |
517 |
acactttcaagaagattcagatagtgtgatgcatgtgttccttggcatgttacctg |
572 |
Q |
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| T |
10888212 |
acactttcaagaagagtcagatagtgtgctgcatgtgttccttggcatgttacctg |
10888267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 10855881 - 10855997
Alignment:
| Q |
167 |
tttttattcaattgatgatatttaaacaataaatttaattcctaaagctcatcagtcgtcactatccaatgcttctttgcttctactcatactttgttgt |
266 |
Q |
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|||||||| ||| ||||||||||||||||| ||| ||||||||||||||||| |||| ||| |||||| | |||| ||||| |||||||||||||||| |
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| T |
10855881 |
tttttatttaatggatgatatttaaacaattaatctaattcctaaagctcataagtcatcaatatccatttattctatgctttgactcatactttgttgt |
10855980 |
T |
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| Q |
267 |
ccagtgatagactaata |
283 |
Q |
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| T |
10855981 |
ctagtgatggactaata |
10855997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 10855491 - 10855537
Alignment:
| Q |
10 |
aagaaaatcatccagaggaccaagcccttattccaattgaaaaggta |
56 |
Q |
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| T |
10855491 |
aagaagatcatccagaggagcaagcccttgttccagttgaaaaggta |
10855537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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