View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19556_high_13 (Length: 375)
Name: NF19556_high_13
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 34320493 - 34320843
Alignment:
| Q |
10 |
catcatcaaccaaaaattacaagaagaagaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34320493 |
catcatcaaccaaaaattacaagaagaagaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttctgtttttccacaaagg |
34320592 |
T |
|
| Q |
110 |
gatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34320593 |
gatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaa |
34320692 |
T |
|
| Q |
210 |
tagcaacttctagttctatgcattcacctccatcacgtgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttcca |
309 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34320693 |
tggcaacttctagttctatgcattcacctccatcacgtgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttcca |
34320792 |
T |
|
| Q |
310 |
gacggctttatttagcatgggtgtagatcttcgcaaaagaatggttcctgc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34320793 |
gacggctttatttagcatgggtgtagatcttcgcaaaagaatggttcctgc |
34320843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 358
Target Start/End: Original strand, 34329424 - 34329749
Alignment:
| Q |
30 |
aagaagaagaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccaga |
129 |
Q |
| |
|
||||| |||||| ||| ||||||||||||| |||||| |||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||| | ||| |
|
|
| T |
34329424 |
aagaaaaagaaggagaaaaagggttattagaattaccctttcatttccttgatggaggagcttcaatgtttccacaaagagatttacctatttttcaaga |
34329523 |
T |
|
| Q |
130 |
acttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatg |
229 |
Q |
| |
|
|||||| | | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
|
|
| T |
34329524 |
acttgttcttaagagagaaaacaatgtggtgtgtaaaagatttgtgtttcaaccctcaatgatcaagtcccttaagaaaatggcaacttctagttcggtg |
34329623 |
T |
|
| Q |
230 |
cattcacctccatcacgtgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttccagacggctttatttagcatgg |
329 |
Q |
| |
|
|||| |||| |||||||||||| || |||||||||||||| || | | |||||| ||| ||||||||||||| |||| | || ||||| |||| |
|
|
| T |
34329624 |
catt---ctcccacacgtgtacaagttgtgactgcatggatttacaaatgcacggtttcaataacgggattaaatttcaagacatcattgtttagtatgg |
34329720 |
T |
|
| Q |
330 |
gtgtagatcttcgcaaaagaatggttcct |
358 |
Q |
| |
|
||| ||| |||||||||||||||||||| |
|
|
| T |
34329721 |
ctgttgattttcgcaaaagaatggttcct |
34329749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 358
Target Start/End: Complemental strand, 36622252 - 36621993
Alignment:
| Q |
96 |
tttttccacaaagggatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaa |
195 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||| | || |||||||||||| |||||||| | |||||||| |
|
|
| T |
36622252 |
tttttccacaaagggatttacctattttcccagaaaatgtgttaaagagagaaaacaatgttgagtttaaaaggtttgtttttcaacctgcgatgatcaa |
36622153 |
T |
|
| Q |
196 |
gtcccttaaggcaatagcaacttctagttctatgcattcacctccatcacgtgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatg |
295 |
Q |
| |
|
||| ||||||||||| | |||||||||||| |||| || |||| |||| || |||| |||| |||||||||||| |||| ||| || ||| ||||| |
|
|
| T |
36622152 |
gtctcttaaggcaatggtaacttctagttccatgcctt---ctcccacacgcgtgcaagttgtaattgcatggatttacaagcatgctgtatcaataatg |
36622056 |
T |
|
| Q |
296 |
ggattaaatttccagacggctttatttagcatgggtgtagatcttcgcaaaagaatggttcct |
358 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||| ||| |||| |||||||||||||||||| |
|
|
| T |
36622055 |
gggttaaatttccagacggcttcgttttacatggttgtgaatctacgcaaaagaatggttcct |
36621993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 47 - 358
Target Start/End: Complemental strand, 36627526 - 36627218
Alignment:
| Q |
47 |
aaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccagaacttgtgttaacgagaa |
146 |
Q |
| |
|
|||| ||||||||||| ||| || ||||||||||| ||| || | ||||||||||||||||||| |||| ||||||||| | ||| ||| || | |
|
|
| T |
36627526 |
aaagagttattagtatcacccttgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttcccagaaatggtgataaagaaag |
36627427 |
T |
|
| Q |
147 |
aaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatgcattcacctccatcacg |
246 |
Q |
| |
|
|||||||||| || | |||||||||||| |||||||| ||||||| ||||| ||||||||||| | ||||||||||| ||||||| |||| | | |
|
|
| T |
36627426 |
aaaacaatgtcgtatttaaaaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcatt---ctcccacgca |
36627330 |
T |
|
| Q |
247 |
tgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttccagacggctttatttagcatgggtgtagatcttcgcaaa |
346 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||| |||||| ||||||| ||||||||||||||||| | ||||||||| ||| |||||||| | | |
|
|
| T |
36627329 |
agtacaagttgtaactgcatggatttacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtaga |
36627230 |
T |
|
| Q |
347 |
agaatggttcct |
358 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36627229 |
agaatggttcct |
36627218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 358
Target Start/End: Complemental strand, 36633098 - 36632790
Alignment:
| Q |
47 |
aaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccagaacttgtgttaacgagaa |
146 |
Q |
| |
|
|||| ||||||||||| ||| || ||||||||||| |||||| ||||||||||||||||||| || |||||||||| ||| | || |||| |
|
|
| T |
36633098 |
aaagagttattagtatcacccttaagtttacttgatgcaggagcaataatttttccacaaagggatttgcctgttttcccagagattgcgggaaagagag |
36632999 |
T |
|
| Q |
147 |
aaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatgcattcacctccatcacg |
246 |
Q |
| |
|
|||||||||| || | |||||||||| | |||||||| |||||||||| || ||||||||||| | ||||||||||| |||||||| ||| ||| |
|
|
| T |
36632998 |
aaaacaatgtcgtatttaaaaggtttttttttcaacctgcaatgatcaaatctcttaaggcaatggtaacttctagtttcatgcattc---tcccacaca |
36632902 |
T |
|
| Q |
247 |
tgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttccagacggctttatttagcatgggtgtagatcttcgcaaa |
346 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| | |||||||| ||||||| ||||||||||| ||||| | ||| |||||| |||| ||||| | ||| |
|
|
| T |
36632901 |
tgtacaagttgtaactgcatggatttacaagcatacagtttcaataatggggttaaatttccaaacggcgtcgttttgcatggctgtaaatcttagaaaa |
36632802 |
T |
|
| Q |
347 |
agaatggttcct |
358 |
Q |
| |
|
||||||| |||| |
|
|
| T |
36632801 |
agaatggatcct |
36632790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University