View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19556_high_17 (Length: 351)
Name: NF19556_high_17
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 2390265 - 2389933
Alignment:
| Q |
8 |
ccaagaatattaccaattacccttaattttgtttagagaatgtaacaaatttttatgacattttctctctctttccaattaggccgtctacactcctcca |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2390265 |
ccaacaatattaccaattacccttaattttgtttagagaatgtaacaaatttttatgacattttctctctctttccaattaggccgtctacactcctcca |
2390166 |
T |
|
| Q |
108 |
aaaccagtacgaggaggaattccaatctgttttccacaggtaattttagat-------agcagtactatttatttaacacctgaattacacaaatctata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2390165 |
aaaccagtacgaggaggaattccaatctgttttccacaggtaattttagattttagatagcagtactatttatttaacacctgaattacacaaatctata |
2390066 |
T |
|
| Q |
201 |
tagatagatagatagataaaaaggttggttggtgtgattttttagtttggaaaccgtggaacactagagcaacatggatttgcaaggaataagatatggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2390065 |
tagatagatagatagataaaaaggttggttggtgtgattttttagtttggaaaccgtggaacactagagcaacatggatttgcaaggaataagatatggg |
2389966 |
T |
|
| Q |
301 |
ttattgatcaaaatcctccaccgctgcccacag |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2389965 |
ttattgatcaaaatcctccaccgctgcccacag |
2389933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 36807781 - 36807825
Alignment:
| Q |
105 |
ccaaaaccagtacgaggaggaattccaatctgttttccacaggta |
149 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36807781 |
ccaaaagcaatacgaggaggaattccaatatgttttccacaggta |
36807825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University