View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_high_18 (Length: 346)
Name: NF19556_high_18
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 40174489 - 40174345
Alignment:
| Q |
193 |
gaagtggtgttccggtgtatggtccacctcggcctggcatgccccctccaccaaatgctccaaatcaacaacagcaacagtgattgtagaattgattggt |
292 |
Q |
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| T |
40174489 |
gaagtggtgttcctgtgtatggtccacctcggcctggcatgccccctccaccaaatgctccaaatcaacaacagcaacagtgattgtagaattgattggt |
40174390 |
T |
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| Q |
293 |
atgtttgtttctgttattttgctcttactttgtttgatgatgatg |
337 |
Q |
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| T |
40174389 |
atgtttgtttctgttattttgctcttactttgtttgatgatgatg |
40174345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 40174684 - 40174554
Alignment:
| Q |
1 |
caccgcctcctataccgccggggcaatttgggcagagaccaggtggtcctccaccacaatttggtatgccgcctcctcagtatgggcagagaccaatggg |
100 |
Q |
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| T |
40174684 |
caccgcctcctatgccgccggggcaatttgggcagagaccaggtggtcctccaccacaatttggtatgccacctcctcagtatgggcagagaccaatggg |
40174585 |
T |
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| Q |
101 |
gccacctcctcctggtcagatggtgagagga |
131 |
Q |
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| T |
40174584 |
gccacctcctcctggtcagatggtgagagga |
40174554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 34400973 - 34401057
Alignment:
| Q |
47 |
tcctccaccacaatttggtatgccgcctcctcagtatgggcagagaccaatggggccacctcctcctggtcagatggtgagagga |
131 |
Q |
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| T |
34400973 |
tcctccgccacaattttccatgccgcctcctcagtttggacagagacctatgggcccacctcctcctggacagatgatgagagga |
34401057 |
T |
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