View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_high_26 (Length: 299)
Name: NF19556_high_26
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 14139519 - 14139790
Alignment:
| Q |
10 |
attattctgtaagtgtaattgctgtttgattaatgtttttcatttgattttagaatttggcgcggctgccgcagtctccgttgcgtttagttgacagagg |
109 |
Q |
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| T |
14139519 |
attattctgtaagtgtaattgctgtttgattaatgtttttcatttgattttagaatttggcgcggctgccgcagtctccgttgcgtttagttgacagagg |
14139618 |
T |
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| Q |
110 |
aattcctgtaaggaagccatttttggaacctagtctggattaagnnnnnnnnnnnnnnnnntttaattctgttttaaaactttagggaataactgatcct |
209 |
Q |
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| T |
14139619 |
aattcctgtaaggaagccatttttggaacctagtctggattaagttattattattattatttttaattctgttttaaaactttagggaataactgatcct |
14139718 |
T |
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| Q |
210 |
atgctttacattggaatgctattcagtatgtttgcatggcatgtagaagatcactatttgtacaggtatatt |
281 |
Q |
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| T |
14139719 |
atgctttacattgggatgctattcagtatgtttgcatggcatgtagaagatcactatttgtacaggtatatt |
14139790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 14155327 - 14155426
Alignment:
| Q |
182 |
tttaaaactttagggaataactgatcctatgctttacattggaatgctattcagtatgtttgcatggcatgtagaagatcactatttgtacaggtatatt |
281 |
Q |
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| T |
14155327 |
tttaaaattttagggattaactgatcctatgctttacattgggatgctattcagtatgtttgcatggcatgcagaagatcattatttgtacaggtatatt |
14155426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 14155152 - 14155272
Alignment:
| Q |
14 |
ttctgtaagtgtaattgctgtttgattaatgtttttcatttgattttagaatttggcgcggctgccgcagtctccgttgcgtttagttgacagaggaatt |
113 |
Q |
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| T |
14155152 |
ttctgtaagtgtaattattgtttgattaacacttttcattttattttagaatttgccgcggctgccacagtctccattgcgtttagttgacaggaaaatt |
14155251 |
T |
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| Q |
114 |
cctgtaaggaagccatttttg |
134 |
Q |
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| T |
14155252 |
ccagtaaggaatcaatttttg |
14155272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 1038714 - 1038646
Alignment:
| Q |
210 |
atgctttacattggaatgctattcagtatgtttgcatggcatgtagaagatcactatttgtacaggtat |
278 |
Q |
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| T |
1038714 |
atgctctacattgggatgttatttggtatgtttgcatggcatgtagaagatcactatttgtacaggtat |
1038646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 1038893 - 1038775
Alignment:
| Q |
32 |
tgtttgattaatgtttttcatttgattttagaatttggcgcggctgccgcagtctccgt----tgcgtttagttgacagaggaattcctgtaaggaagcc |
127 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| | | |||||| |||||||| |||||| |||||||| | |
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| T |
1038893 |
tgtttgattaacacttttcatttgattttagaatttgtcgcggctgccacagtctctattacgtacgtttacttgacagaaaaattccagtaaggaatca |
1038794 |
T |
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| Q |
128 |
atttttggaacctagtctg |
146 |
Q |
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| T |
1038793 |
atttttgtaacctaatctg |
1038775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 12304095 - 12304179
Alignment:
| Q |
193 |
agggaataactgatcctatgctttacattggaatgctattcagtatgtttgcatggcatgtagaagatcactatttgtacaggta |
277 |
Q |
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| T |
12304095 |
agggagtaacagaacccatgctatacattggaatgctgtttagtatgtttgcatggcatgtggaggatcattatttgtacaggta |
12304179 |
T |
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