View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_high_31 (Length: 271)
Name: NF19556_high_31
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_31 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 71 - 271
Target Start/End: Original strand, 10498643 - 10498849
Alignment:
| Q |
71 |
gtagtaccatgtttcagattcccaacaaccgacccatcatcaccatgtttctgtttctgatcttcatcataaacatcatcatagtaacatc------atc |
164 |
Q |
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| T |
10498643 |
gtagtaccatgtttcagattcccaacaaccgacccattatcaccatgtttctgtttctgatcttcatcataaacatcatcacagtaacatcatcatcatc |
10498742 |
T |
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| Q |
165 |
agatcttcgacctgggttttactcaaaaacatgtccaaaagctgaaaccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgtt |
264 |
Q |
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| T |
10498743 |
agatcttcgacctgggttttactcaaaaacatgtccaaaagctgaaaccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgtt |
10498842 |
T |
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| Q |
265 |
gcctctg |
271 |
Q |
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| T |
10498843 |
gcctctg |
10498849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 10586554 - 10586395
Alignment:
| Q |
112 |
accatgtttctgtttctgatcttcatcataaacatcatcatagtaacatcatcagatcttcgacctgggttttactcaaaaacatgtccaaaagctgaaa |
211 |
Q |
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| T |
10586554 |
accatgcttatgtttctgatcttcatcataaacataatcatagtaacatcaacagatcttcgacctgggtattactcaaaaacatgtccacaagctgaaa |
10586455 |
T |
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| Q |
212 |
ccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgttgcctctg |
271 |
Q |
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| T |
10586454 |
caactgtgagagatgttatgagaaatgctcttaaaaaagaaccaagaagtgttgcctctg |
10586395 |
T |
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