View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19556_high_34 (Length: 255)
Name: NF19556_high_34
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 42205668 - 42205429
Alignment:
| Q |
18 |
gtttggagatatactttgaaccatgtactacttgttgcggccacaggtgcgtatcacacacacac------tgaccatgtctccatcgacactttgatag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42205668 |
gtttggagatatactttgaaccatgtactacttgttgcggccacaggtgcgtatcacacacacacacacactgaccatgtctccatcgacactttgatag |
42205569 |
T |
|
| Q |
112 |
atatgatatgttaatcatgtgataggaaaagagagatagaaaaataatgatcattgttgaatgagtgtatgaaaacgattaatgttcaagtatcatattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205568 |
atatgatatgttaatcatgtgataggaaaagagagatagaaaaataatgatcattgttgaatgagtgtatgaaaacgattaatgttcaagtatcatattg |
42205469 |
T |
|
| Q |
212 |
ttgattttatatctatgttagacatttgtcataactcata |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42205468 |
ttgattttatatctatgttagacatttgtcatgactcata |
42205429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 42214536 - 42214297
Alignment:
| Q |
18 |
gtttggagatatactttgaaccatgtactacttgttgcggccacaggtgcgtatcacacacacac------tgaccatgtctccatcgacactttgatag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42214536 |
gtttggagatatactttgaaccatgtactacttgttgcggccacaggtgcgtatcacacacacacacacactgaccatgtctccatcgacactttgatag |
42214437 |
T |
|
| Q |
112 |
atatgatatgttaatcatgtgataggaaaagagagatagaaaaataatgatcattgttgaatgagtgtatgaaaacgattaatgttcaagtatcatattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42214436 |
atatgatatgttaatcatgtgataggaaaagagagatagaaaaataatgatcattgttgaatgagtgtatgaaaacgattaatgttcaagtatcatattg |
42214337 |
T |
|
| Q |
212 |
ttgattttatatctatgttagacatttgtcataactcata |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42214336 |
ttgattttatatctatgttagacatttgtcatgactcata |
42214297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 31720906 - 31720948
Alignment:
| Q |
106 |
tgatagatatgatatgttaatcatgtgataggaaaagagagat |
148 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
31720906 |
tgatagatgtgatatgttaatgatgtgataggtaaagagagat |
31720948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University