View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_high_35 (Length: 250)
Name: NF19556_high_35
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42205428 - 42205189
Alignment:
| Q |
1 |
ctcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacacttttgtagtttttgcaaaaagtgtttgcaatcttccatatatatg |
100 |
Q |
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| T |
42205428 |
ctcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacacttttgtagtttttgcaaaaagtgtttgcaatcttccatatatatg |
42205329 |
T |
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| Q |
101 |
gctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtcttttgactttgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205328 |
gctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtcttttgactttgtta |
42205229 |
T |
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| Q |
201 |
tgttttttccttttgcagtaatagattcccctactctgtg |
240 |
Q |
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| T |
42205228 |
tgttttttccttttgcagtaatagattcccctactctgtg |
42205189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42214296 - 42214057
Alignment:
| Q |
1 |
ctcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacacttttgtagtttttgcaaaaagtgtttgcaatcttccatatatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214296 |
ctcaatttagtttattgtgcatcaacttctaacttttctaattaagaatatacacttttgtagtttttgcaaaaagtgtttgcaatcttccatatatatg |
42214197 |
T |
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| Q |
101 |
gctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtcttttgactttgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214196 |
gctggacaaaggtgccctttatgcaaggaatggataaggtattcatgaagtaattaatttttcaaaatcaaatatgtattgttgtcttttgactttgtta |
42214097 |
T |
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| Q |
201 |
tgttttttccttttgcagtaatagattcccctactctgtg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42214096 |
tgttttttccttttgcagtaatagattcccctactctgtg |
42214057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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