View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_high_4 (Length: 483)
Name: NF19556_high_4
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_4 |
 | |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 14 - 466
Target Start/End: Complemental strand, 43685281 - 43684829
Alignment:
| Q |
14 |
aatataagaatctgcaataaaagcagcaacaacaggtgtgaaatttccagctgcagaggatatgagaagtatctgggtagctgtggcaagatgaagattg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43685281 |
aatataagaatctgcaataaaagcagcaacaagaggtgtgaaatttccagctgcagaggatatgagaagtatctgggtagctgtggcaagatgaagattg |
43685182 |
T |
|
| Q |
114 |
taagaacccatcaaatacaatatcatgttaggtcctaatccagtacttgccatcctagcaagtgcctcattagctgcaacatcaaaaccatattaatatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43685181 |
taagaacccatcaaatacaatatcatgttaggtcctaatccagtacttgccatcctagcaagtgcctcattagctgcaacatcaaaaccatattaatatt |
43685082 |
T |
|
| Q |
214 |
atacatcaaattcaagctcattcaatataaaaataaaaatgcatgaaagtcatagatattagataagataccaatgataaaaggcatggtgacaagacca |
313 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43685081 |
atacatcaaattcaagctcattcaatataaaaataaaaatgcatgcaagttatagatattagataagataccaatgataaaaggcatggtgacaagacca |
43684982 |
T |
|
| Q |
314 |
cccttgcttctttgtggtttttgttgagaaaccatttcttcttcatcagcagcatcaacagaacaaagttgaagttccttgtccannnnnnnnattggta |
413 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43684981 |
cccttgcttctttctggtttttgttgagaaaccatttcttcttcatcagcagcatcaacagaacaaagttgaagttccttgtccattttttttattggta |
43684882 |
T |
|
| Q |
414 |
tctaataatgttcctgcaaaagatagatatatagaaagataagtagagtgagt |
466 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43684881 |
tcttataatgttcctgcaaaagatagatatatagaaagataagtagagtgagt |
43684829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 43712752 - 43712285
Alignment:
| Q |
17 |
ataagaatctgcaataaaagcagcaacaacaggtgtgaaatttccagctgcagaggatatgagaagtatctgggtagctgtggcaagatgaagattgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||| ||||||||||| |||| | || |||| ||||| |||| |
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| T |
43712752 |
ataagaatctgcaataaaagcaccaatcacaggtgtgaaattgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtat |
43712653 |
T |
|
| Q |
117 |
gaacccatcaaatacaatatcatgttaggtcctaatccagtacttgccatcctagcaagtgcctcattagctgcaac-------atcaaaac-----cat |
204 |
Q |
| |
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|| ||||||||||||||||||||||| ||| || ||| |||||||||| |||||||||| ||||| |||||| |||| ||| || |
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| T |
43712652 |
gatcccatcaaatacaatatcatgttgggtaatagtcccacacttgccatcttagcaagtgcttcattccctgcaaataaaacaatcacaacagcaacaa |
43712553 |
T |
|
| Q |
205 |
attaatattatacatcaaa-ttcaagctcattcaatataaaaataaaa-----atgcatgaaagtcatagatattagataagataccaatgataaaaggc |
298 |
Q |
| |
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| ||||||||| | ||| ||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
43712552 |
aaccatattatacgtaaaaattcaagctcattcaaagtaaaaataaaataaaaatgcatgcaaatcatagatattagataagataccaatgataaaaggc |
43712453 |
T |
|
| Q |
299 |
atggtgacaagaccacccttgcttctttgtggtttttgttgagaaaccatttcttcttcatcagcagcatcaacagaacaaagttgaagttccttgtcca |
398 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43712452 |
atggtgacaagaccacccttgcttctttgtggtttttgctgagaaaccatttcttcttcatcagcagcatcaacagaacaaagttgaagttccttgtcca |
43712353 |
T |
|
| Q |
399 |
nnnnnnnnattggtatctaataatgttcc---tgcaaaagatagatatatagaaagataagtagagtga |
464 |
Q |
| |
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||||||| ||||||||||||| ||||||| | | ||||||||||||| ||||||||||| |
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|
| T |
43712352 |
ttttttttattggtaactaataatgttcctgatgcaaaa-agatatatatagaaagacaagtagagtga |
43712285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 43697827 - 43697453
Alignment:
| Q |
19 |
aagaatctgcaataaaagcagcaacaacaggtgtgaaatttccagctgcagaggatatgagaagtatctgggtagctgtggcaagatgaagattgtaaga |
118 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| | |||||||||||||| ||||||||||| |||| | || |||| ||||| |||| || |
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| T |
43697827 |
aagaatctgcaataaaagcaccaatcacaggtgtgaaattgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatga |
43697728 |
T |
|
| Q |
119 |
acccatcaaatacaatatcatgttaggtcctaatccagtacttgccatcctagcaagtgcctcattagctgcaa------------catcaaaaccatat |
206 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||| || ||| || ||||||||||| |
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| T |
43697727 |
tcccatcaaatacaatatcatgtttggtaatagtcccaaacttgccatcctagcaagtgcctcattcccttcaatcaaaataatcacaacaaaaccatat |
43697628 |
T |
|
| Q |
207 |
taatattatacatcaaa-ttcaagctcattcaatataaaaataaaaatgcatgaaagtcatagatattagataagataccaatgataaaaggcatggtga |
305 |
Q |
| |
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|| ||| |||||||||| ||||||||||||||| | |||||||||||| |||||||||||| |||||||||| |||||||||||||||| |
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| T |
43697627 |
ta-tat-atacatcaaaattcaagctcattcaa------agtaaaaatgcatgcaagtcatagata-------agataccaattataaaaggcatggtga |
43697543 |
T |
|
| Q |
306 |
caagaccacccttgcttctttgtggtttttgttgagaaaccatttcttcttcatcagcagcatcaacagaacaaagttgaagttccttgtcca |
398 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
43697542 |
taagaccacccttgcgtctttgtggtt---gttgagaaaccatttcttcttcattagcagcatcaacagaacaaagctgaagttccttgtcca |
43697453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 43726348 - 43726159
Alignment:
| Q |
17 |
ataagaatctgcaataaaagcagcaacaacaggtgtgaaatttccagctgcagaggatatgagaagtatctgggtagctgtggcaagatgaagattgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||| |||||| ||||| |||||| ||||||||||||| ||||| |
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| T |
43726348 |
ataagaatctgcaataaaagcaccaaccacaggtgtgaaattgctagctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaa |
43726249 |
T |
|
| Q |
117 |
gaacccatcaaatacaatatcatgttaggtcctaatccagtacttgccatcctagcaagtgcctcattagctgcaacatcaaaaccatat |
206 |
Q |
| |
|
||||| |||||||||||||| || || || ||| |||||||||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
43726248 |
cttcccatgaaatacaatatcatattgggcaatagtcccaaacttgccatccttgcaagtgcctcattagctgcaacaataaaaccatat |
43726159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 273 - 398
Target Start/End: Complemental strand, 43725962 - 43725849
Alignment:
| Q |
273 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtttttgttgagaaaccatttcttcttcatcagcagcatcaac |
372 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |||||||||||||| |||||| || |||||||||||||||| ||| || | ||||| |
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| T |
43725962 |
tagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgagg---ttgttgagaaaccatt---------tcatcatcgtcaac |
43725875 |
T |
|
| Q |
373 |
agaacaaagttgaagttccttgtcca |
398 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
43725874 |
agaacaaagttgaagttccttgtcca |
43725849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 25272133 - 25272008
Alignment:
| Q |
17 |
ataagaatctgcaataaaagcagcaacaacaggtgtgaaatttccagctgcagaggatatgagaagtatctgggtagctgtggcaagatgaagattgtaa |
116 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||| |||| || || ||||||| |||| ||| ||||||||| ||||| | |||||||||| |||||| |
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|
| T |
25272133 |
ataagaatctgcaacaaaagcaccaaccacaggcatgaacttgccggctgcagcagataagaggagtatctggttagcttggccaagatgaaggttgtaa |
25272034 |
T |
|
| Q |
117 |
gaacccatcaaatacaatatcatgtt |
142 |
Q |
| |
|
| ||||||||||||||||||||||| |
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|
| T |
25272033 |
ggtcccatcaaatacaatatcatgtt |
25272008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 25270122 - 25270063
Alignment:
| Q |
273 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtt |
332 |
Q |
| |
|
||||||| |||||||||| |||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
25270122 |
tagataacgtaccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggtt |
25270063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 26098 - 26223
Alignment:
| Q |
17 |
ataagaatctgcaataaaagcagcaacaacaggtgtgaaatttccagctgcagaggatatgagaagtatctgggtagctgtggcaagatgaagattgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||| || | ||||||| ||| ||| ||||||||| ||||| | |||||||||| |||||| |
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|
| T |
26098 |
ataagaatctgcaataaaagcaccaaccacaggcatgaacttgctggctgcagcaaataagaggagtatctggttagcttggccaagatgaaggttgtaa |
26197 |
T |
|
| Q |
117 |
gaacccatcaaatacaatatcatgtt |
142 |
Q |
| |
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| ||||||||||||||||||||||| |
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|
| T |
26198 |
ggtcccatcaaatacaatatcatgtt |
26223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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