View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19556_high_42 (Length: 226)

Name: NF19556_high_42
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19556_high_42
NF19556_high_42
[»] chr1 (19 HSPs)
chr1 (18-213)||(41440483-41440678)
chr1 (137-199)||(27474376-27474438)
chr1 (147-200)||(45402191-45402244)
chr1 (136-200)||(4349733-4349797)
chr1 (139-203)||(15511150-15511214)
chr1 (137-201)||(42304207-42304271)
chr1 (153-200)||(4430015-4430062)
chr1 (144-203)||(27136658-27136717)
chr1 (137-200)||(46247953-46248016)
chr1 (137-203)||(6358214-6358280)
chr1 (147-201)||(18741967-18742021)
chr1 (137-203)||(19974074-19974140)
chr1 (135-200)||(10378733-10378798)
chr1 (132-200)||(23796560-23796628)
chr1 (128-200)||(31382205-31382277)
chr1 (147-203)||(31442399-31442455)
chr1 (153-197)||(33594147-33594191)
chr1 (137-197)||(43768237-43768297)
chr1 (137-201)||(50606497-50606561)
[»] scaffold0049 (1 HSPs)
scaffold0049 (134-201)||(59050-59117)
[»] chr7 (6 HSPs)
chr7 (153-201)||(3469191-3469239)
chr7 (138-197)||(18747562-18747621)
chr7 (153-200)||(33871926-33871973)
chr7 (128-200)||(7879710-7879782)
chr7 (136-200)||(23419673-23419737)
chr7 (153-197)||(45018939-45018983)
[»] chr5 (8 HSPs)
chr5 (137-197)||(3771414-3771474)
chr5 (135-203)||(12575658-12575726)
chr5 (137-199)||(25622533-25622595)
chr5 (137-200)||(16957386-16957449)
chr5 (137-199)||(38879656-38879718)
chr5 (147-203)||(208937-208993)
chr5 (136-200)||(24323705-24323768)
chr5 (136-200)||(24360329-24360392)
[»] chr8 (3 HSPs)
chr8 (137-200)||(35261751-35261814)
chr8 (147-200)||(44530221-44530274)
chr8 (137-200)||(35107311-35107374)
[»] chr4 (15 HSPs)
chr4 (137-188)||(6966175-6966226)
chr4 (132-203)||(20639653-20639724)
chr4 (137-203)||(36816384-36816450)
chr4 (135-201)||(44363128-44363194)
chr4 (137-200)||(10277757-10277820)
chr4 (140-203)||(36589813-36589876)
chr4 (136-199)||(38755907-38755970)
chr4 (132-199)||(50555651-50555718)
chr4 (137-200)||(51865038-51865101)
chr4 (147-201)||(16494290-16494344)
chr4 (136-197)||(30690175-30690236)
chr4 (130-199)||(33836480-33836549)
chr4 (136-200)||(11394924-11394988)
chr4 (136-200)||(11404651-11404715)
chr4 (145-197)||(19027923-19027975)
[»] chr2 (15 HSPs)
chr2 (153-200)||(99281-99328)
chr2 (154-201)||(19185760-19185807)
chr2 (137-200)||(44643595-44643658)
chr2 (133-199)||(14530393-14530459)
chr2 (137-201)||(10543771-10543835)
chr2 (132-200)||(10546235-10546303)
chr2 (74-106)||(33368890-33368922)
chr2 (137-200)||(9671251-9671314)
chr2 (137-188)||(11514519-11514570)
chr2 (154-201)||(31158456-31158503)
chr2 (157-200)||(32781308-32781351)
chr2 (130-200)||(17380231-17380300)
chr2 (157-198)||(33795359-33795400)
chr2 (132-200)||(36871564-36871631)
chr2 (138-198)||(40579750-40579810)
[»] chr6 (7 HSPs)
chr6 (137-199)||(6808468-6808530)
chr6 (137-190)||(13628256-13628309)
chr6 (147-200)||(18277203-18277256)
chr6 (137-201)||(12885984-12886048)
chr6 (137-200)||(13267797-13267860)
chr6 (137-199)||(29355855-29355917)
chr6 (154-203)||(14390875-14390924)
[»] chr3 (8 HSPs)
chr3 (137-203)||(53996565-53996631)
chr3 (141-197)||(19731099-19731155)
chr3 (137-200)||(40272812-40272875)
chr3 (137-200)||(54484785-54484848)
chr3 (137-199)||(13628790-13628852)
chr3 (137-190)||(10484616-10484669)
chr3 (136-201)||(10795422-10795487)
chr3 (137-201)||(516505-516569)
[»] scaffold0057 (2 HSPs)
scaffold0057 (156-209)||(46726-46779)
scaffold0057 (131-200)||(46903-46972)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 41440483 - 41440678
Alignment:
Q  18 agaatcaaactgctgtttgtttgatagtggtttcttttatttatgtatttattctgttttgctgtatgtgaagttttggatttgagattcttctattata 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41440483 agaatcaaactgctgtttgtttgatagtgatttcttttatttatgtatttattctgttttgctgtatgtgaagttttggatttgagattcttctcttata 41440582  T
Q  118 ccaaataaataaaataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttggcatattcttc 213  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41440583 ccgaataaataaaataaaaaaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttggcatattcttc 41440678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 27474438 - 27474376
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    |||||||| |||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  27474438 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 27474376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 45402244 - 45402191
Alignment:
Q  147 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||| ||||||||||||||||||| ||| |||| ||||||||| |||||||||    
T  45402244 ccggtgcactaaagctcccgcatacgcagggtctgggaaggggtcccaccattt 45402191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 4349797 - 4349733
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  4349797 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 4349733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 15511150 - 15511214
Alignment:
Q  139 agggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    ||||||| ||||| ||||||||||| | ||||| ||| ||| |||||||||| ||||||||||||    
T  15511150 agggcagcccggtgcactaaagctcacacatacgcagggtccaggaaggggtaccaccattttgg 15511214  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 42304207 - 42304271
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    |||||||| |||||| ||||||||||||| ||||| ||| |||  ||||||||| ||||||||||    
T  42304207 aaagggcaatccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccatttt 42304271  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 4430015 - 4430062
Alignment:
Q  153 cactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||||||||||||||||||||||  || || |||||||||||||||||    
T  4430015 cactaaagctcccgcatacacaggatccagaaaggggttccaccattt 4430062  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 27136658 - 27136717
Alignment:
Q  144 agtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    |||||||| ||||  ||||||||||||||||   ||||||||||||| ||||||||||||    
T  27136658 agtccggtgcactggagctcccgcatacacatgatctaggaaggggtcccaccattttgg 27136717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 46247953 - 46248016
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  46247953 aaagggcaacccggtacactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 46248016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 6358280 - 6358214
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    ||||||||| || | ||||||||| ||| |||||| ||| |||| ||||||||| ||||||||||||    
T  6358280 aaagggcagccccgatcactaaagatcctgcatacgcagggtctgggaaggggtcccaccattttgg 6358214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 18741967 - 18742021
Alignment:
Q  147 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    ||||| ||||||||||| ||||||| ||| |||| ||||||||| ||||||||||    
T  18741967 ccggtgcactaaagctctcgcatacgcagggtctgggaaggggtcccaccatttt 18742021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 19974074 - 19974140
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    ||||||||| || || |||||||||||||||||||| ||||||  |||| |||| ||| ||||||||    
T  19974074 aaagggcagccccgtgcactaaagctcccgcatacatagagtccgggaatgggtcccatcattttgg 19974140  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 10378733 - 10378798
Alignment:
Q  135 ataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||| |||||| ||||| ||||||||||||||||||  ||| ||| | |||||||| |||||||||    
T  10378733 ataatgggcagcccggtgcactaaagctcccgcatatgcagggtccaagaaggggtcccaccattt 10378798  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 23796628 - 23796560
Alignment:
Q  132 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||| ||||||||| ||||| |||||||||||| |||||  ||| |||| |||||||||  ||||||||    
T  23796628 taaaaaaagggcagcccggtgcactaaagctccagcatatgcagggtctgggaaggggtctcaccattt 23796560  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 31382205 - 31382277
Alignment:
Q  128 aaaataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||| ||| ||||||||  ||||| || |||||||||||||||  ||| ||| |||||||||| |||||||||    
T  31382205 aaaaaaaaaaaagggcaacccggtacagtaaagctcccgcatatgcagggtccaggaaggggtcccaccattt 31382277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 31442399 - 31442455
Alignment:
Q  147 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    ||||| ||| ||||||||| ||||||||| |||  ||||||||| ||||||||||||    
T  31442399 ccggtgcaccaaagctcccacatacacagtgtccgggaaggggtcccaccattttgg 31442455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 33594147 - 33594191
Alignment:
Q  153 cactaaagctcccgcatacacagagtctaggaaggggttccacca 197  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||    
T  33594147 cactaaagctcccgcatacgcagggtctgggaaggggtcccacca 33594191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 43768297 - 43768237
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 197  Q
    ||||||||| ||||| || ||||||||||| |||| ||| |||| ||||||||| ||||||    
T  43768297 aaagggcagcccggtgcattaaagctcccgtatacgcagggtctgggaaggggtcccacca 43768237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 50606561 - 50606497
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    ||||||||  ||||| ||||||||||||||||||  ||| |||  ||||||||| ||||||||||    
T  50606561 aaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccatttt 50606497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 59117 - 59050
Alignment:
Q  134 aataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    |||||||||||  ||| | ||||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  59117 aataaagggcaacccgatgcactaaagctcccgcatacgcagagtctgggaaggggtcccaccatttt 59050  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 3469191 - 3469239
Alignment:
Q  153 cactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||||    
T  3469191 cactaaagctcccgcatacacagggtctaggaaggggtcccgccatttt 3469239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 18747621 - 18747562
Alignment:
Q  138 aagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 197  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||  |||||||||| ||||||    
T  18747621 aagggcagcccggtgcactaaagctcccgcatacgcagggttcaggaaggggtcccacca 18747562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 33871926 - 33871973
Alignment:
Q  153 cactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||||    
T  33871926 cactaaagctctcgcatacacagggtctgggaaggggtcccaccattt 33871973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 7879782 - 7879710
Alignment:
Q  128 aaaataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||| ||| ||||||||  ||||| |||| |||||||||||||| ||| |||  ||||||||| |||||||||    
T  7879782 aaaaaaaaaaaagggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccattt 7879710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 23419673 - 23419737
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||||||||| ||| | ||||||||| |||||| || ||  |||||||||||||| |||||||||    
T  23419673 taaagggcagcccgatgcactaaagcccccgcacacgcaaggtctaggaaggggtcccaccattt 23419737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 45018939 - 45018983
Alignment:
Q  153 cactaaagctcccgcatacacagagtctaggaaggggttccacca 197  Q
    ||||||||||||||||||| ||| |||  ||||||||||||||||    
T  45018939 cactaaagctcccgcatacgcagggtccgggaaggggttccacca 45018983  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 3771474 - 3771414
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 197  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||  ||||||||| ||||||    
T  3771474 aaagggcagcccggtgcactaaagctcccacatacacagagtccgggaaggggtcccacca 3771414  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 12575658 - 12575726
Alignment:
Q  135 ataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    ||||||||||| ||||| ||| |||||||| |||||| ||| ||| |||||||||| ||||||||||||    
T  12575658 ataaagggcagcccggtgcaccaaagctcctgcatacgcagggtccaggaaggggtcccaccattttgg 12575726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 25622595 - 25622533
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    |||||||| |||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  25622595 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 25622533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 16957449 - 16957386
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  16957449 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 16957386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 38879718 - 38879656
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  38879718 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 38879656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 208937 - 208993
Alignment:
Q  147 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    ||||| |||||||||||  |||||| ||| ||| |||||||||| ||||||||||||    
T  208937 ccggtgcactaaagctcttgcatacccagggtccaggaaggggtcccaccattttgg 208993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 24323705 - 24323768
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||||||| || ||| |||||||||||||| |||| |||| ||||||||| |||| ||||    
T  24323705 taaagggcagtccagtgcac-aaagctcccgcatatacagggtctgggaaggggtcccactattt 24323768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 24360329 - 24360392
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||||||| || ||| |||||||||||||| |||| |||| ||||||||| |||| ||||    
T  24360329 taaagggcagtccagtgcac-aaagctcccgcatatacagggtctgggaaggggtcccactattt 24360392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 35261814 - 35261751
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||| |||||||||| |||||||||    
T  35261814 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccattt 35261751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 44530274 - 44530221
Alignment:
Q  147 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||| ||||||||||||||||||| ||| ||| |||||||||| |||||||||    
T  44530274 ccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccattt 44530221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 35107311 - 35107374
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||  ||||| |||||||||| |||||||||||| |||  ||||||||| |||||||||    
T  35107311 aaagggcaacccggtgcactaaagcttccgcatacacagcgtccgggaaggggtcccaccattt 35107374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 6966226 - 6966175
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggg 188  Q
    |||||||||||||||||||||| ||||| ||||||||||||||  |||||||    
T  6966226 aaagggcagtccggttcactaatgctcctgcatacacagagtccgggaaggg 6966175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 20639653 - 20639724
Alignment:
Q  132 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    |||| ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||||||    
T  20639653 taaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattttgg 20639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 36816384 - 36816450
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    ||||||||  ||||| ||||||||||||||||||||||| ||| ||||||| || ||||| ||||||    
T  36816384 aaagggcaacccggtacactaaagctcccgcatacacagggtccaggaaggagtcccacctttttgg 36816450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 44363128 - 44363194
Alignment:
Q  135 ataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    ||||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||||    
T  44363128 ataaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttt 44363194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 10277757 - 10277820
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||||||| |||||||||||| | ||||||||||  ||| |||| |||||||||| ||||||||    
T  10277757 aaagggcaatccggttcactagaactcccgcatatgcagggtctgggaaggggtttcaccattt 10277820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 36589876 - 36589813
Alignment:
Q  140 gggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    |||||| ||||| ||| |||||||||||||||| || ||  |||||||||| ||||||||||||    
T  36589876 gggcagcccggtgcaccaaagctcccgcatacatagggttcaggaaggggtcccaccattttgg 36589813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 38755907 - 38755970
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    |||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  38755907 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 38755970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 50555651 - 50555718
Alignment:
Q  132 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    |||| ||||||||| ||||| ||||||| |||| |||||| ||| |||  ||||||||||||||||||    
T  50555651 taaaaaaagggcagcccggtgcactaaaactcctgcatacgcagggtccgggaaggggttccaccatt 50555718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 51865038 - 51865101
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||||||||| || |||||||||||||||| ||| |||  ||||||||  |||||||||    
T  51865038 aaagggcagtccggtgcaataaagctcccgcatacgcagggtccgggaaggggccccaccattt 51865101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 16494344 - 16494290
Alignment:
Q  147 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    ||||| |||||||||| |||||||||||| |||| |||| |||| ||||||||||    
T  16494344 ccggtacactaaagcttccgcatacacagggtctgggaaagggtcccaccatttt 16494290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 30690175 - 30690236
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 197  Q
    |||||||||| | ||| ||||||||||||||||||| ||| |||  ||||||||| ||||||    
T  30690175 taaagggcagcctggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca 30690236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 33836480 - 33836549
Alignment:
Q  130 aataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    |||||| ||||||||  ||| | ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  33836480 aataaaaaaagggcaacccgttgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 33836549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 11394988 - 11394924
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||||||||  ||||| ||||||||||||||||||| ||| |||  | ||||||| |||||||||    
T  11394988 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcccaccattt 11394924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 11404715 - 11404651
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||||||||  ||||| ||||||||||||||||||| ||| |||  | ||||||| |||||||||    
T  11404715 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcccaccattt 11404651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 19027975 - 19027923
Alignment:
Q  145 gtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 197  Q
    ||||||| ||||||||||||| ||||| |||||||| | ||||||| ||||||    
T  19027975 gtccggtgcactaaagctcccacatacgcagagtctggaaaggggtcccacca 19027923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 99281 - 99328
Alignment:
Q  153 cactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  99281 cactaaagctcccgcatacacagggtctgagaaggggttccaccattt 99328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 19185760 - 19185807
Alignment:
Q  154 actaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  19185760 actaaagctcccgcatacgcagggtccaggaaggggttccaccatttt 19185807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 44643658 - 44643595
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||| ||||| |||||| |||||||||||| ||| |||| ||||||||| |||||||||    
T  44643658 aaagggcagcccggtgcactaaggctcccgcatacgcagggtctgggaaggggtcccaccattt 44643595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 14530459 - 14530393
Alignment:
Q  133 aaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    ||||||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  14530459 aaataaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 14530393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 10543835 - 10543771
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||||    
T  10543835 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttt 10543771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 10546303 - 10546235
Alignment:
Q  132 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||| ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  10546303 taaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 10546235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 33368890 - 33368922
Alignment:
Q  74 ttttgctgtatgtgaagttttggatttgagatt 106  Q
    |||||||||||||||||||||||||||||||||    
T  33368890 ttttgctgtatgtgaagttttggatttgagatt 33368922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 9671314 - 9671251
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  9671314 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 9671251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 11514570 - 11514519
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggg 188  Q
    |||||||| |||||| ||||||||||||||||||| ||| |||| |||||||    
T  11514570 aaagggcaatccggtgcactaaagctcccgcatacgcagggtctgggaaggg 11514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 31158456 - 31158503
Alignment:
Q  154 actaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    |||||||||||||||||| ||| |||| ||||||||| ||||||||||    
T  31158456 actaaagctcccgcatacgcagggtctgggaaggggtcccaccatttt 31158503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 32781308 - 32781351
Alignment:
Q  157 aaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||    
T  32781308 aaagctcccgcatacacagggtctgggaaggggtcccaccattt 32781351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 17380231 - 17380300
Alignment:
Q  130 aataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||||||| || ||||| ||| ||||||||||||| | ||| ||| |||||||||||||| |||||    
T  17380231 aataaataaagggaagcccggtgcac-aaagctcccgcatccgcagggtccaggaaggggttccatcattt 17380300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 33795400 - 33795359
Alignment:
Q  157 aaagctcccgcatacacagagtctaggaaggggttccaccat 198  Q
    ||||||||||||||||||| |||| ||||||||| |||||||    
T  33795400 aaagctcccgcatacacagggtctgggaaggggtcccaccat 33795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 36871631 - 36871564
Alignment:
Q  132 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    |||| ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  36871631 taaaaaaagggcaacccggtgcactaaagctcccgcatacgcag-gtccgggaaggggtcccaccattt 36871564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 40579750 - 40579810
Alignment:
Q  138 aagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccat 198  Q
    |||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||    
T  40579750 aagggcaacccggtgcactaaagctcccgcatactcagggtccgggaaggggtcccaccat 40579810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 6808530 - 6808468
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    ||||||||  ||||| ||||||||||||||||||||||| |||  ||||||||| ||||||||    
T  6808530 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggggtcccaccatt 6808468  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 13628256 - 13628309
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggt 190  Q
    |||||||| ||| || ||||||| ||||||||||| ||||||||||||||||||    
T  13628256 aaagggcaatccagtgcactaaaactcccgcatacgcagagtctaggaaggggt 13628309  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 18277203 - 18277256
Alignment:
Q  147 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||| || ||||||||||||||||  ||||||||||||||||| |||||||||    
T  18277203 ccggtgcagtaaagctcccgcatacgtagagtctaggaaggggtcccaccattt 18277256  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 12886048 - 12885984
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    ||||||||  ||||| ||||||||||||| ||||| ||| |||| ||||||||| ||||||||||    
T  12886048 aaagggcaacccggtgcactaaagctcccacatacgcagggtctgggaaggggtcccaccatttt 12885984  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 13267860 - 13267797
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||  ||||| |||| |||||||||||||| ||| ||| |||||||||| |||||||||    
T  13267860 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccaggaaggggtcccaccattt 13267797  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 29355855 - 29355917
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  29355855 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 29355917  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 14390875 - 14390924
Alignment:
Q  154 actaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    |||| ||||||||||||||||||||||  ||| |||| ||||||||||||    
T  14390875 actacagctcccgcatacacagagtctgagaaagggtcccaccattttgg 14390924  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 53996565 - 53996631
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 203  Q
    ||||||||| ||||| ||||||||||||| ||||| ||| |||  ||||||||| ||||||||||||    
T  53996565 aaagggcagcccggtgcactaaagctcccacatacgcagtgtcagggaaggggtcccaccattttgg 53996631  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 19731155 - 19731099
Alignment:
Q  141 ggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 197  Q
    ||||| ||||| |||||||||||| ||||||||||||||| |||| |||| ||||||    
T  19731155 ggcagcccggtgcactaaagctcctgcatacacagagtctgggaaagggtcccacca 19731099  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 40272812 - 40272875
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  40272812 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 40272875  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 54484848 - 54484785
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  54484848 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 54484785  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 13628790 - 13628852
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 199  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  13628790 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 13628852  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 10484616 - 10484669
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggt 190  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||| ||||||||||    
T  10484616 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccaggaaggggt 10484669  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 10795422 - 10795487
Alignment:
Q  136 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    |||||||||  | ||| |||| |||||||||||||| ||| ||| |||||||||| ||||||||||    
T  10795422 taaagggcaacctggtgcactgaagctcccgcatacgcagggtccaggaaggggtcccaccatttt 10795487  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 516569 - 516505
Alignment:
Q  137 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 201  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| || |||||||    
T  516569 aaagggcaacccggtgcactaaagctcccgcatacgcagggtcggggaaggggtcccgccatttt 516505  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 46726 - 46779
Alignment:
Q  156 taaagctcccgcatacacagagtctaggaaggggttccaccattttggcatatt 209  Q
    |||||||||||||||| ||| |||| ||||||||| |||||||||||| |||||    
T  46726 taaagctcccgcatacgcagggtctgggaaggggtcccaccattttggtatatt 46779  T

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Target: scaffold0057; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 46972 - 46903
Alignment:
Q  131 ataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 200  Q
    ||||| ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  46972 ataaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 46903  T

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