View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_high_43 (Length: 217)
Name: NF19556_high_43
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 49861344 - 49861522
Alignment:
| Q |
16 |
atgaacctctgttcccaaaacctagtaaaaaggattaagaaactgatgaaagtacagtaacaacagaagcttcagcttcacaaataaataaataaaccga |
115 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
49861344 |
atgatcctctgttcccaaaaccttgtaaaaaggattaagaaactgatgaaagtacagtaaca---gtagcttcagcttcacaaataaataaataaaccga |
49861440 |
T |
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| Q |
116 |
aacctactcactccaaccaaccaaaccaaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccatt |
202 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49861441 |
aacctactcactccaacc-----aaccaaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccatt |
49861522 |
T |
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