View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_1 (Length: 714)
Name: NF19556_low_1
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 29 - 313
Target Start/End: Original strand, 928895 - 929174
Alignment:
| Q |
29 |
tatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatgca |
128 |
Q |
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| T |
928895 |
tatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatgca |
928994 |
T |
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| Q |
129 |
cttaaaattacattcaaatatataccc--gtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaaca |
226 |
Q |
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| T |
928995 |
cttaaaa---cattcaaatatatacccctgtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaaca |
929091 |
T |
|
| Q |
227 |
atagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgactagcaagcaacggagaaacacatcat |
313 |
Q |
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| T |
929092 |
atagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgact----agcaacggagaaacacatcat |
929174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 554 - 703
Target Start/End: Original strand, 929746 - 929895
Alignment:
| Q |
554 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagcaaaatgcattagattgtatccatc |
653 |
Q |
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| T |
929746 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagaaaaatgcattagattgtatccatc |
929845 |
T |
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| Q |
654 |
catacacgataaatgtgagaatttcctacctttcttcccacctttgatac |
703 |
Q |
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| T |
929846 |
catacacgataaatgtgagaatttcctacctttcttaccacctttgatac |
929895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 306 - 390
Target Start/End: Original strand, 929256 - 929340
Alignment:
| Q |
306 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgaataaga |
390 |
Q |
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| T |
929256 |
cacaacatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgagtaaga |
929340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 385 - 464
Target Start/End: Original strand, 929362 - 929441
Alignment:
| Q |
385 |
ataagaaacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
464 |
Q |
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| T |
929362 |
ataaaaaacagtaagacgatgaaataagtcacaattaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
929441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 363 - 459
Target Start/End: Complemental strand, 1201614 - 1201514
Alignment:
| Q |
363 |
tgaaacattaaagaaagtccgaataaga----aacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgta |
458 |
Q |
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| T |
1201614 |
tgaaacattaaagataatctgaataagattaaaacagtaagacaatgcaataactcacaatcaggacctcgtgaagtttttgtatgatatgaaaaatgta |
1201515 |
T |
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| Q |
459 |
t |
459 |
Q |
| |
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|
| T |
1201514 |
t |
1201514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 1201696 - 1201640
Alignment:
| Q |
306 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttc |
362 |
Q |
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|||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
1201696 |
cacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttc |
1201640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 541
Target Start/End: Original strand, 929642 - 929676
Alignment:
| Q |
507 |
ataaccgtttaacggtttagtcctcgattccatcc |
541 |
Q |
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| T |
929642 |
ataacagtttaacggtttagtcctcgattccatcc |
929676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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