View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19556_low_16 (Length: 366)
Name: NF19556_low_16
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 54074025 - 54074243
Alignment:
| Q |
1 |
aattggaatgtaactagcctgtataggaaattagattaactaatgtagttaattttgttttaattcacaaactttgtggtcaaaagctgaatttttaaca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54074025 |
aattagaatgtaactagcctgtataggaaattggattaactaatgtagttaattttgttttaattcacaaactttgtggtcaaaagctgaatttttaaca |
54074124 |
T |
|
| Q |
101 |
acnnnnnnnntactgcaaaaaatcatcaagatagtgagacataattgagacaactgaatttttcatggtgggttttgcaggttttcacatagttgtgtta |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54074125 |
acaaaaaaa-tactgcaaaaaatcatcaagatagtgagacataattgagacaactgaatttttcatggtgggttttgcaggttttcacatagttgtgtta |
54074223 |
T |
|
| Q |
201 |
acattggatgctttgcatag |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
54074224 |
acattggatgctttgcatag |
54074243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 219 - 352
Target Start/End: Original strand, 54074321 - 54074454
Alignment:
| Q |
219 |
agacaacttagattttgttagaataacacagagaaagagtttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattctattgtgcatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54074321 |
agacaacttagattttgttagaataacacagagaaagagcttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattatattgtgcatc |
54074420 |
T |
|
| Q |
319 |
tgtttggtatttttgtttctctattttatatcat |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
54074421 |
tgtttggtatttttgtttctctattttatatcat |
54074454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 346
Target Start/End: Complemental strand, 25649701 - 25649605
Alignment:
| Q |
251 |
gaaagagtttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattctattgtgc-atctgtttggtatttttgtttctctatttta |
346 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | | ||||||||||||| |||||||||| ||| || |||||||||| ||||||||||||||||| |
|
|
| T |
25649701 |
gaaagagtttgttgcgcatattgtgtacattggatgattttgaataaattatcattctattatgcgatatgtttggtatctttgtttctctatttta |
25649605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 19541663 - 19541735
Alignment:
| Q |
277 |
acattgaaagtttttgaataaattgtcattctattgtgcatctgtttggtatttttgtttctctattttatat |
349 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
19541663 |
acattgaaagattttaaataacttgtcattgtattgtgcatctcattggtatctttgtttctctattttatat |
19541735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41702824 - 41702606
Alignment:
| Q |
1 |
aattggaatgtaactagcctgtataggaaattagattaactaatgtagttaattttgttttaattcacaaactttgtggtcaaaagctgaatttttaaca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41702824 |
aattagaatgtaactagcctgtataggaaattggattaactaatgtagttaattttgttttaattcacaaactttgtggtcaaaagctgaatttttaaca |
41702725 |
T |
|
| Q |
101 |
acnnnnnnnntactgcaaaaaatcatcaagatagtgagacataattgagacaactgaatttttcatggtgggttttgcaggttttcacatagttgtgtta |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41702724 |
acaaaaaaa-tactgcaaaaaatcatcaagatagtgagacataattgagacaactgaatttttcatggtgggttttgcaggttttcacatagttgtgtta |
41702626 |
T |
|
| Q |
201 |
acattggatgctttgcatag |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41702625 |
acattggatgctttgcatag |
41702606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 219 - 352
Target Start/End: Complemental strand, 41702528 - 41702395
Alignment:
| Q |
219 |
agacaacttagattttgttagaataacacagagaaagagtttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattctattgtgcatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41702528 |
agacaacttagattttgttagaataacacagagaaagagcttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattatattgtgcatc |
41702429 |
T |
|
| Q |
319 |
tgtttggtatttttgtttctctattttatatcat |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41702428 |
tgtttggtatttttgtttctctattttatatcat |
41702395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 21134377 - 21134595
Alignment:
| Q |
1 |
aattggaatgtaactagcctgtataggaaattagattaactaatgtagttaattttgttttaattcacaaactttgtggtcaaaagctgaatttttaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21134377 |
aattggaatgtaactagcctgtataggaaattggattaactaatgtagttaattttgttttaattcacaaactttgtgatcaaaagctgaatttttaaca |
21134476 |
T |
|
| Q |
101 |
acnnnnnnnntactgcaaaaaatcatcaagatagtgagacataattgagacaactgaatttttcatggtgggttttgcaggttttcacatagttgtgtta |
200 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21134477 |
ac-aaaaaaatactgcaaaaaatcgtcaagatagtgagacataattgagaccactgaatttttcatggtgggttttgcaggttttcacatggttgtgtta |
21134575 |
T |
|
| Q |
201 |
acattggatgctttgcatag |
220 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
21134576 |
accttggatgctttgcatag |
21134595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 219 - 352
Target Start/End: Original strand, 21134673 - 21134806
Alignment:
| Q |
219 |
agacaacttagattttgttagaataacacagagaaagagtttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattctattgtgcatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21134673 |
agacaacttagattttgttagaataacacagagaaagagcttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattatattgtgcatc |
21134772 |
T |
|
| Q |
319 |
tgtttggtatttttgtttctctattttatatcat |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
21134773 |
tgtttggtatttttgtttctctattttatatcat |
21134806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9842011 - 9842068
Alignment:
| Q |
1 |
aattggaatgtaactagcctgtataggaaattagattaactaatgtagttaattttgt |
58 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
9842011 |
aattggaatgtaactagcgtgtataggaaattggattaactaatgtagttagttttgt |
9842068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39310823 - 39310795
Alignment:
| Q |
1 |
aattggaatgtaactagcctgtataggaa |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39310823 |
aattggaatgtaactagcctgtataggaa |
39310795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University