View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_20 (Length: 339)
Name: NF19556_low_20
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 47472642 - 47472954
Alignment:
| Q |
11 |
cataggcattttccttataatgttatgcattgcaccagaaacactaaaaaagtaaacaaaaacagaaccagccaaccaaaccctgggatcatgcaacaat |
110 |
Q |
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| T |
47472642 |
cataggcattttccttataatgttatgcattgcaccagaaacactaaaaaagtaaacaaaaacagaaccagccaaccaaaccctaggatcatgcaacaat |
47472741 |
T |
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| Q |
111 |
gttttcccagtcaaaagcttcttaacaaaaaacgacaaccagatcaaaaccacaacaacaatgagaataattttgtttctagacaaaatcggaggacgat |
210 |
Q |
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| T |
47472742 |
gttttcccagtcaaaagcttcttaacaaaaaacgacaaccagatcaaaaccacaacaacaatgagaataattttgtttctagacaaaatcggaggacgat |
47472841 |
T |
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| Q |
211 |
gaattggtcccacagagagtttcgttttcacttccacgaattccgccatagattcagcaagtctagagaaatccccttgatccatatgttcagaatcctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47472842 |
gaattggtcccacagagagtttcgttttcacttccacgaattccgccatagattcagcaagtctagagaaatccccttgatccatatgttcagaatcctt |
47472941 |
T |
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| Q |
311 |
caacccatgatta |
323 |
Q |
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| T |
47472942 |
caacccatgatta |
47472954 |
T |
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