View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_21 (Length: 336)
Name: NF19556_low_21
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 40174659 - 40174976
Alignment:
| Q |
1 |
ttgccccggcggcataggaggcggtggacccctcaccatctgcggtggaccttgtccaggatgtccaggatacggcatttgaccaggcggacgcataaca |
100 |
Q |
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| T |
40174659 |
ttgccccggcggcataggaggcggtggacccctcaccatctgcggtggaccttgtccaggatgtccaggatacggcatttgaccaggtggacgcataaca |
40174758 |
T |
|
| Q |
101 |
ggcggaccaccaggatacgaaacaggtggccgcgagatctgcggctgcatcataccaggagcaggtccaccaacaccacgaacaggaccagcaagaccag |
200 |
Q |
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| T |
40174759 |
ggcggaccaccaggatacgaaacaggcggccgcgagatctgcggctgcatcataccaggagcaggtccaccaacaccacgaacaggaccagcaagaccag |
40174858 |
T |
|
| Q |
201 |
gctgagcttgaataaccggcgccggaggaatacctctaccagcagcacgtccaattccaggaccagccattgcagcagcatttacagctttcgaacgaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40174859 |
gctgagcttgaataaccggcgccggaggaatacctctaccagcagcacgtccaattccaggaccagccattgcagcagcatttacagctttcgaacgaga |
40174958 |
T |
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| Q |
301 |
ctcttcaggaggtggagg |
318 |
Q |
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| T |
40174959 |
ctcttcaggaggtggagg |
40174976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 68 - 318
Target Start/End: Complemental strand, 34400900 - 34400644
Alignment:
| Q |
68 |
ggatacggcatttgaccaggcgg---acgcataacaggcggaccaccaggatacgaaacaggtggccgcgagatctgcggctgcatcataccaggagcag |
164 |
Q |
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| T |
34400900 |
ggatatggcatctgaccaggcggtggacgcataaccggcggaccaccgggatacgaaaccggaggacgcgagatttgcggctgcatcataccaggagcag |
34400801 |
T |
|
| Q |
165 |
gtccaccaacaccacgaacaggaccagcaagaccaggctgagcttgaataaccggcgcc---ggaggaatacctctaccagcagcacgtccaattccagg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
34400800 |
gtccaccaacaccacgaacaggaccagcaagaccaggctgagcttgaataactgtcgccggaggaggaatacctcttccagcagcacgaccaattccagg |
34400701 |
T |
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| Q |
262 |
accagccattgcagcagcatttacagctttcgaacgagactcttcaggaggtggagg |
318 |
Q |
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||||||||||||||||||||| ||||| || |||||||| ||||| ||||| ||||| |
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| T |
34400700 |
accagccattgcagcagcattaacagccttggaacgagattcttccggaggaggagg |
34400644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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