View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_23 (Length: 318)
Name: NF19556_low_23
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 71 - 302
Target Start/End: Original strand, 24985262 - 24985493
Alignment:
| Q |
71 |
gtaggattgtggagagtgtaggggaaggagtgaatgacttgaaagaaaatgacaaggtggtgctaatattcaatggtgagtgtggtgagtgtaagtgttg |
170 |
Q |
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| T |
24985262 |
gtaggattgtggaaagtgtaggggaaggagtgaatgacatgaaagaaaatgacaaagtggtgctaatattcaatggtgagtgtggtgagtgtaagtgctg |
24985361 |
T |
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| Q |
171 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagattttcttcaatagatggcaaa |
270 |
Q |
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| T |
24985362 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagattttcttcaatagatggcaaa |
24985461 |
T |
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| Q |
271 |
cccatttttcatttcttgaacacttcaacttt |
302 |
Q |
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| T |
24985462 |
cccatttttcatttcttgaatacttcaacttt |
24985493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 302
Target Start/End: Original strand, 24993181 - 24993412
Alignment:
| Q |
71 |
gtaggattgtggagagtgtaggggaaggagtgaatgacttgaaagaaaatgacaaggtggtgctaatattcaatggtgagtgtggtgagtgtaagtgttg |
170 |
Q |
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| T |
24993181 |
gtaggattgtggagagtgtaggggaaggagtgaaagacttaaacgaaaatgacaaagtggtgatagtattcaacggggagtgtggtgagtgtaactactg |
24993280 |
T |
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| Q |
171 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagattttcttcaatagatggcaaa |
270 |
Q |
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| T |
24993281 |
caagtgtgagaaaaccaacatgtgtgagaagtatggtgtaaacccaatgaagagactaatgtgtgatggtacaagtagattctctacaatagatggcaaa |
24993380 |
T |
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| Q |
271 |
cccatttttcatttcttgaacacttcaacttt |
302 |
Q |
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| T |
24993381 |
ctcatttaccatttcttgaactcttcaacttt |
24993412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 24985182 - 24985229
Alignment:
| Q |
12 |
taacatcaaatcaaataatattgaacctataatgttgacttaattatg |
59 |
Q |
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| T |
24985182 |
taacatcaaatcaagtaatattgaacctataatgttgacttaattatg |
24985229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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