View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_25 (Length: 310)
Name: NF19556_low_25
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 5809533 - 5809825
Alignment:
| Q |
1 |
tcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5809533 |
tcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgtt-tttgtttctgaaatcacttgt |
5809631 |
T |
|
| Q |
101 |
gtttctcccagagcaatacgtacagcaaggtcatcagcttctcgattcagtaaatcacttttactaacaccatatttccgagcaacattttctacaatct |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809632 |
gtttctcccagagcaatacgtacagcaagatcatcagcttctcgatccagtaaatcacttttactaacaccatatttccgagcaacattttctacaatct |
5809731 |
T |
|
| Q |
201 |
attaacatcaacacgtgattaaaatatgcatgcacctataaataagagaaaaagcaacctgctagctatacagtataaccaaaaacgtttgagg |
294 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809732 |
attaacatcaacacgtgattaaaatatgcatacacctataaataagagaaaaagcaacctgctagctatacagtataaccaaaaacgtttgagg |
5809825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37754964 - 37755190
Alignment:
| Q |
1 |
tcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgt |
100 |
Q |
| |
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|||||||| |||||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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| T |
37754964 |
tcttttcacgccatcaactttacaattcacaagctcctccagagactccacattcactccagcttttttaaatgcattttttgtttcaaaaatcacttga |
37755063 |
T |
|
| Q |
101 |
gtttctcccagagcaatacgtacagcaaggtcatcagcttctcgattcagtaaatcacttttactaacaccatatttccgagcaacattttctacaatct |
200 |
Q |
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|||| | |||||| | |||| |||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||| | | |||||| |||||| |
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| T |
37755064 |
gtttgtgccagagaatgacgtgaagcaagatcatcagcttctggatcaagaaaatcacttttactaacaccatatttccgagaagcgttttctgcaatct |
37755163 |
T |
|
| Q |
201 |
attaacatcaacacgtgattaaaatat |
227 |
Q |
| |
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|||||||||||||| |||||||||||| |
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| T |
37755164 |
attaacatcaacacatgattaaaatat |
37755190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37760938 - 37761164
Alignment:
| Q |
1 |
tcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgt |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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| T |
37760938 |
tcttttcacgccatcaactttacaattcacaagctcctccagagactccacattcactccagcttttttaaatgcattttttgtttcaaaaatcacttga |
37761037 |
T |
|
| Q |
101 |
gtttctcccagagcaatacgtacagcaaggtcatcagcttctcgattcagtaaatcacttttactaacaccatatttccgagcaacattttctacaatct |
200 |
Q |
| |
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|||| | |||||| | |||| |||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||| | | |||||| |||||| |
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| T |
37761038 |
gtttgtgccagagaatgacgtgaagcaagatcatcagcttctggatcaagaaaatcacttttactaacaccatatttccgagaagcgttttctgcaatct |
37761137 |
T |
|
| Q |
201 |
attaacatcaacacgtgattaaaatat |
227 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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| T |
37761138 |
attaacatcaacacatgattaaaatat |
37761164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38605739 - 38605513
Alignment:
| Q |
1 |
tcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgt |
100 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||| ||||||| | |
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| T |
38605739 |
tcttttaacgccataaactttaccctccgcaagctcctccaaagactccacattcactccagcctttttaaatgcattttttgtttctaaaatcacatca |
38605640 |
T |
|
| Q |
101 |
gtttctcccagagcaatacgtacagcaaggtcatcagcttctcgattcagtaaatcacttttactaacaccatatttccgagcaacattttctacaatct |
200 |
Q |
| |
|
|||||||||||||||| | | |||||| |||||||||||| || || ||||||||||||||||||||||| |||||||| ||| |||||| ||||| |
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| T |
38605639 |
gtttctcccagagcaacatttgcagcaacatcatcagcttctggacccaataaatcacttttactaacaccatgtttccgagtaacgttttctgtaatct |
38605540 |
T |
|
| Q |
201 |
attaacatcaacacgtgattaaaatat |
227 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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| T |
38605539 |
attaacatcaacacatgattaaaatat |
38605513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37739112 - 37739338
Alignment:
| Q |
1 |
tcttttcaagccatcaactttacccttcgcaagctcctccaaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||| || ||||| ||||||||||||||| ||||||| || ||||||||| |||| | | |
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| T |
37739112 |
tcttttcctgccatcaactttacccttcgcatgctcctccagagactccacgttcactccagcttttctaaatgcattttttgtttctttaatcccgtca |
37739211 |
T |
|
| Q |
101 |
gtttctcccagagcaatac-gtacagcaaggtcatcagcttctcgattcagtaaatcacttttactaacaccatatttccgagcaacattttctacaatc |
199 |
Q |
| |
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|||||| |||||| ||||| || |||||| ||||||||||| ||| ||| |||||||||||||||||||||| |||||||||| | |||||||||||| |
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| T |
37739212 |
gtttctgccagag-aataccgtgaagcaagaccatcagcttctggatccagaaaatcacttttactaacaccatgtttccgagcagcgttttctacaatc |
37739310 |
T |
|
| Q |
200 |
tattaacatcaacacgtgattaaaatat |
227 |
Q |
| |
|
||||||||||||||| |||||||||||| |
|
|
| T |
37739311 |
tattaacatcaacacatgattaaaatat |
37739338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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