View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19556_low_26 (Length: 299)
Name: NF19556_low_26
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 40140476 - 40140743
Alignment:
| Q |
15 |
tataaacaaattacaaaggaacaatttacatcagccccagatccatctgctgaacaaggtctagtagttcaatataatttcacttgctacaatgatgcaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40140476 |
tataaacaaattacaaaggaacaatttacatcagccccagatccatctgctgaacaaggtctagtagttcaatataatttcacttgctacaatgatgcaa |
40140575 |
T |
|
| Q |
115 |
ggctactccacaaccatattttcgtgcgtggaagagaggggaagtttcaaaacttattgtgtttgagataatattttccaattttgttagctgtaaatct |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40140576 |
ggctactccacaaccatattttcttgcgtggaagagaggggaagtttcaaaacttattgtgtttgagataatattttccaattttgttagctgtaaatct |
40140675 |
T |
|
| Q |
215 |
ttttctgaataaaaatattgcgtatttttgctccaaattaatgaattggatccgaatcgcctaccttt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40140676 |
ttttctgaataaaaatattgcgtatttttgctcgaaattaatgaattggatccgaatcgcctaccttt |
40140743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University