View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19556_low_3 (Length: 528)

Name: NF19556_low_3
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19556_low_3
NF19556_low_3
[»] chr1 (5 HSPs)
chr1 (1-464)||(30172516-30172986)
chr1 (1-224)||(30176413-30176635)
chr1 (1-204)||(30144730-30144927)
chr1 (315-464)||(30145042-30145206)
chr1 (1-71)||(30169989-30170059)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 30172516 - 30172986
Alignment:
Q  1 tcaatatctttggatgttattggggctactggttttgattcatgtcctacaagatgatcatgggtaatgatttgaagaatatcattctttataaaataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30172516 tcaatatctttggatgttattggggctactggttttgattcatgtgctacaagatgatcatgggtaatgatatgaagaatatcattctttataaaataac 30172615  T
Q  101 cattaccatttccttgtggagcaagatagatgctgtaaacaaacttgcaaaattccgcaacatcttcgattttcacaaatcctgacactactaaaagcac 200  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| | |||| |||| |||||||||||||||||||||||| || || ||||||||    
T  30172616 cattaccatttccttgtggagcaagatagatggtgtgaacaaacttgcgacattctgcaatatcttcgattttcacaaatcctgaaacaacaaaaagcac 30172715  T
Q  201 accacgaccccaacattcaagaaactgtactat-ttggtttggatattatcgaatttgagtgacattataaggttatgaatttggttgagttcggtagcg 299  Q
    |||| ||||||||||||||||||| || ||| | |||||||| |||  |||||| |||||||||| |||||| ||||||||||| |||||||||||||||    
T  30172716 accaagaccccaacattcaagaaagtgcactgtattggtttgtatagcatcgaacttgagtgacagtataagattatgaatttgattgagttcggtagcg 30172815  T
Q  300 gtcgtgactgtttggtcgttgattacaagaatcatggtgttgttttccgtgtagaagtaatgcatgttgttagcatcactacaaagaagtccacagtatt 399  Q
    || |||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30172816 gttgtgactgtgtggctgttgatgacaagaatcatggtgctgttttccgtgtagaagtaatgcatgttgttagcatcactacaaagaagtccatagtatt 30172915  T
Q  400 gtggagcaaac----tgcgtgacacacagaaattataacattaatatcaatac--atgatcattaatcaag 464  Q
    |||||||||||    |||||||||||||||||||||||||||||||||| |||  || |||||||||||||    
T  30172916 gtggagcaaactgcatgcgtgacacacagaaattataacattaatatcattacatattatcattaatcaag 30172986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30176413 - 30176635
Alignment:
Q  1 tcaatatctttggatgttattggggctactggttttgattcatgtcctacaagatgatcatgggtaatgatttgaagaatatcattctttataaaataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30176413 tcaatatctttggatgttattggggctactggttttgattcatgtgctacaagatgatcatgggtaatgatatgaagaatatcattctttataaaataac 30176512  T
Q  101 cattaccatttccttgtggagcaagatagatgctgtaaacaaacttgcaaaattccgcaacatcttcgattttcacaaatcctgacactactaaaagcac 200  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| | |||| |||| ||||| |||||||||||||||||| || || || |||||    
T  30176513 cattaccatttccttgtggagcaagatagatggtgtgaacaaacttgcgacattctgcaatatctt-gattttcacaaatcctgaaacaacaaatagcac 30176611  T
Q  201 accacgaccccaacattcaagaaa 224  Q
    |||| |||||||||||||| ||||    
T  30176612 accaagaccccaacattcacgaaa 30176635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30144730 - 30144927
Alignment:
Q  1 tcaatatctttggatgttattggggctactggttttgattcatgtcctacaagatgatcatgggtaatgatttgaagaatatcattctttataaaataac 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  |||  |||||||||| |||||||| |||||||||||| |||||||||||||||    
T  30144730 tcaatatctttggatgttattggggctactggttttaattcatgtggtacttgatgatcatgagtaatgatatgaagaatatcactctttataaaataac 30144829  T
Q  101 cattaccatttcct--tgtggagcaagatagatgctgtaaacaaacttgcaaaattccgcaacatcttcgattttcacaaatcctgacactactaaaagc 198  Q
    |        ||| |  | |||||||||||| ||||||| ||||||||||| | ||||| |   ||||| |||||||||||||||||| || |||||||||    
T  30144830 c--------ttcttggtatggagcaagatacatgctgtgaacaaacttgcgacattccacggtatctttgattttcacaaatcctgatacaactaaaagc 30144921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 315 - 464
Target Start/End: Original strand, 30145042 - 30145206
Alignment:
Q  315 tcgttgattacaagaatcatggtgttgttttccgtgtagaagtaatgcatgttgttagcatca---ctacaaagaagtccacagtattgtggagcaaa-- 409  Q
    |||| ||||||||||||||||||| ||| ||| | |||||||| |||||| ||||||||||||   || |||||||||||| ||||||||| ||||||      
T  30145042 tcgtcgattacaagaatcatggtgctgtgttcggagtagaagtcatgcattttgttagcatcatcactgcaaagaagtccatagtattgtgaagcaaagg 30145141  T
Q  410 ----------ctgcgtgacacacagaaattataacattaatatcaatacatgatcattaatcaag 464  Q
              |||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  30145142 attcacccaactgcgtgacacacagaaattatcacattaatatcattacattatcattaatcaag 30145206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30169989 - 30170059
Alignment:
Q  1 tcaatatctttggatgttattggggctactggttttgattcatgtcctacaagatgatcatgggtaatgat 71  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||  |||  |||||| ||| ||||||||    
T  30169989 tcaatatctttggatgttagtggggctactggttttaattcatgtggtacttgatgatgatgagtaatgat 30170059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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