View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_33 (Length: 266)
Name: NF19556_low_33
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3031297 - 3031547
Alignment:
| Q |
1 |
tatgaaggtttacgatcaagcaatgaaagtttttccaaacaatgaaaagttaagcatgtatgaaatatacattgctcgtgctgctgagatatttggggta |
100 |
Q |
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| T |
3031297 |
tatgaaggtttacgatcaagcaacgaaagctgttccaaacaatgaaaagttaagcatgtatgaaatatacattgctcgtgctgctgagatatttggggta |
3031396 |
T |
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| Q |
101 |
cccaagacacgcgagatctatgagcaggcaattgaatccggtcttccagataaggatgtcaaaactatgtgtttgaagtatgctgaactggaaagaagct |
200 |
Q |
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| T |
3031397 |
cccaagacacgcgagatctatgagcaggcaattgaatctggtcttccagataaggatgtcaaaactatgtgtttgaagtatgctgaactggaaagaagct |
3031496 |
T |
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| Q |
201 |
tgggagaaattgaatgtgcccgtggagtatatgtatttgcctccaagtttg |
251 |
Q |
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| T |
3031497 |
tgggagaaattgaacgtgcccgtggagtatatgtatttgcctccaagtttg |
3031547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 12014931 - 12014710
Alignment:
| Q |
33 |
ttccaaacaatgaaaagttaagcatgtatgaaatatacattgctcgtgctgctgagatatttggggtaccca----agacacgcgagatctatgagcagg |
128 |
Q |
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| T |
12014931 |
ttcccaacaatgagaagttcagcatgtatgaaatatacattgctcgtgcagctgatatatttggtgtaccaaaaacacacacgagagatctatgagcatg |
12014832 |
T |
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| Q |
129 |
caattgaatccggtcttccagataaggatgtcaaaactatgtgtttgaagtatgctgaactggaaagaagcttgggagaaattgaatgtgcccgtggagt |
228 |
Q |
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| T |
12014831 |
cgattgaatctggtcttccaaataaggatg-caaaactatgtgtttgaagtatgctgagctggaaagaagcgtaggagaaattgaacgttcccgtggagt |
12014733 |
T |
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| Q |
229 |
atatgtatttgcctccaagtttg |
251 |
Q |
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| T |
12014732 |
atatgtatttgcctccaagtttg |
12014710 |
T |
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