View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19556_low_34 (Length: 260)

Name: NF19556_low_34
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19556_low_34
NF19556_low_34
[»] chr5 (6 HSPs)
chr5 (13-148)||(14316722-14316857)
chr5 (13-148)||(2985441-2985568)
chr5 (181-243)||(26074665-26074729)
chr5 (13-58)||(4307063-4307108)
chr5 (181-243)||(9498695-9498759)
chr5 (186-243)||(41170687-41170746)
[»] chr8 (10 HSPs)
chr8 (13-146)||(34844839-34844964)
chr8 (182-243)||(9483229-9483292)
chr8 (181-243)||(3669740-3669804)
chr8 (211-243)||(3037781-3037813)
chr8 (213-245)||(18372678-18372710)
chr8 (213-243)||(5420704-5420734)
chr8 (214-243)||(9507835-9507864)
chr8 (181-243)||(34834929-34834993)
chr8 (215-243)||(30359662-30359690)
chr8 (181-242)||(30441139-30441202)
[»] chr2 (8 HSPs)
chr2 (13-82)||(43779873-43779942)
chr2 (98-141)||(43779834-43779877)
chr2 (181-243)||(36178646-36178710)
chr2 (181-242)||(15511536-15511599)
chr2 (181-243)||(14745708-14745772)
chr2 (181-243)||(15880316-15880380)
chr2 (181-243)||(28254278-28254342)
chr2 (211-243)||(36178342-36178374)
[»] chr4 (17 HSPs)
chr4 (13-146)||(50720312-50720437)
chr4 (181-243)||(4955356-4955420)
chr4 (181-243)||(22028408-22028472)
chr4 (181-243)||(55933163-55933227)
chr4 (181-242)||(50630794-50630857)
chr4 (78-145)||(12680087-12680153)
chr4 (181-243)||(54108966-54109029)
chr4 (181-243)||(25483389-25483453)
chr4 (181-243)||(34646688-34646752)
chr4 (181-243)||(36629290-36629354)
chr4 (181-243)||(41370410-41370474)
chr4 (181-243)||(45496858-45496922)
chr4 (181-239)||(50002483-50002543)
chr4 (214-243)||(50459774-50459803)
chr4 (181-239)||(54936253-54936313)
chr4 (181-242)||(22183303-22183366)
chr4 (181-242)||(23817720-23817783)
[»] chr1 (11 HSPs)
chr1 (13-111)||(44352418-44352508)
chr1 (181-243)||(3550773-3550837)
chr1 (181-243)||(29798252-29798316)
chr1 (181-243)||(32594757-32594821)
chr1 (181-242)||(17294631-17294694)
chr1 (213-243)||(3875406-3875436)
chr1 (181-243)||(34364978-34365042)
chr1 (181-243)||(44043813-44043877)
chr1 (181-243)||(50052064-50052128)
chr1 (181-242)||(24600355-24600418)
chr1 (182-243)||(41157044-41157107)
[»] chr7 (12 HSPs)
chr7 (181-243)||(30244323-30244387)
chr7 (181-243)||(34218075-34218139)
chr7 (181-243)||(11845244-11845308)
chr7 (179-239)||(14681567-14681629)
chr7 (184-243)||(7517633-7517694)
chr7 (184-243)||(19122784-19122845)
chr7 (181-243)||(23418-23482)
chr7 (181-243)||(6054613-6054677)
chr7 (181-243)||(40094815-40094879)
chr7 (181-243)||(45754768-45754832)
chr7 (181-242)||(1085657-1085720)
chr7 (182-243)||(37533406-37533469)
[»] chr6 (17 HSPs)
chr6 (181-243)||(16107731-16107795)
chr6 (13-56)||(2753509-2753552)
chr6 (184-243)||(2377807-2377868)
chr6 (213-243)||(32460655-32460685)
chr6 (214-243)||(1127413-1127442)
chr6 (181-243)||(3409312-3409376)
chr6 (181-243)||(3409713-3409777)
chr6 (181-243)||(10074032-10074096)
chr6 (181-243)||(10074404-10074468)
chr6 (181-243)||(10911619-10911683)
chr6 (81-146)||(13647193-13647257)
chr6 (181-243)||(16454628-16454692)
chr6 (181-243)||(29518556-29518620)
chr6 (181-243)||(29518973-29519037)
chr6 (181-243)||(32741232-32741296)
chr6 (182-243)||(1846801-1846864)
chr6 (211-243)||(9062422-9062454)
[»] chr3 (17 HSPs)
chr3 (181-243)||(12114603-12114667)
chr3 (78-146)||(21433998-21434065)
chr3 (181-242)||(45395694-45395757)
chr3 (181-243)||(15772907-15772971)
chr3 (181-243)||(22303996-22304060)
chr3 (181-243)||(29644943-29645007)
chr3 (181-243)||(37990680-37990744)
chr3 (84-144)||(19237256-19237316)
chr3 (181-243)||(22304622-22304686)
chr3 (181-243)||(29644622-29644686)
chr3 (181-243)||(32462941-32463005)
chr3 (181-243)||(42342131-42342195)
chr3 (13-58)||(48757721-48757766)
chr3 (181-243)||(49336728-49336792)
chr3 (78-146)||(19269585-19269652)
chr3 (211-243)||(25755447-25755479)
chr3 (182-235)||(39389131-39389186)
[»] scaffold0078 (1 HSPs)
scaffold0078 (181-243)||(5410-5474)
[»] scaffold0702 (1 HSPs)
scaffold0702 (184-243)||(558-619)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 14316857 - 14316722
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctgtgcgagaaaaagtaattgtaactgcttttccactacgccaactgaaaaatgatg 112  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||| | ||| |||||||| | |||||||||||||||| |||||||||||||||||||    
T  14316857 aatataaaaaagggagaagatagaagagtcgaacacgcgacgcctgggagagcaaaagtaactataactgcttttccactgcgccaactgaaaaatgatg 14316758  T
Q  113 tgaatactatgctggatataatatatatagaaacct 148  Q
    |||||| ||||  |||||||||||||||||||||||    
T  14316757 tgaataatatgtcggatataatatatatagaaacct 14316722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 2985568 - 2985441
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctgtgcgagaaaaagtaattgtaactgcttttccactacgccaactgaaaaatgatg 112  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||  |  |||||||| || ||       |||||| || ||| ||||| |||||||||    
T  2985568 aatataaaaaagggagaagaaggaagagtcgaacacgcaacttctagg--agaaaaagcaagtga------ttttccgctgcgctaactggaaaatgatg 2985477  T
Q  113 tgaatactatgctggatataatatatatagaaacct 148  Q
      |||| |||||||||||||||||||||||||||||    
T  2985476 caaataatatgctggatataatatatatagaaacct 2985441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 26074729 - 26074665
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  26074729 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 26074665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 4307063 - 4307108
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctg 58  Q
    ||||||||||||||||||||  ||||| |||||| |||||||||||    
T  4307063 aatataaaaaagggagaagaaggaagaatcgaacccgcaacgtctg 4307108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 9498695 - 9498759
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||  || |  ||||||||||||| |||||||||||||||||    
T  9498695 gagagacaccacactcttacccaaaatcttaaggcaatgggtttatgggtcctcttacttataag 9498759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 41170746 - 41170687
Alignment:
Q  186 acaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  41170746 acaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 41170687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 34844964 - 34844839
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctgtgcgagaaaaagtaattgtaactgcttttccactacgccaactgaaaaatgatg 112  Q
    ||||||||||||||||||||||||||||| |||||||| ||||  ||| ||||||||||||      |||||||||||| |||| ||||| |||||||||    
T  34844964 aatataaaaaagggagaagatagaagagttgaacacgcgacgt--gtgggagaaaaagtaa------ctgcttttccaccacgctaactggaaaatgatg 34844873  T
Q  113 tgaatactatgctggatataatatatatagaaac 146  Q
    | |||| ||||| |||||||||||||||||||||    
T  34844872 taaataatatgccggatataatatatatagaaac 34844839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 9483229 - 9483292
Alignment:
Q  182 agagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||| | ||||||| ||  ||||||||||||||| |||||||||||||||||    
T  9483229 agagacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataag 9483292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 3669804 - 3669740
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| |||||||||||||||||||||||||    
T  3669804 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttacttataag 3669740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 3037781 - 3037813
Alignment:
Q  211 gacaatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||||||||||||||||||||    
T  3037781 gacaatgggtttatgagtcctcttacttataag 3037813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 18372678 - 18372710
Alignment:
Q  213 caatgggtttatgagtcctcttacttataagtg 245  Q
    |||||||||||||||||||||||||||||||||    
T  18372678 caatgggtttatgagtcctcttacttataagtg 18372710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Complemental strand, 5420734 - 5420704
Alignment:
Q  213 caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||||||||||||||||||    
T  5420734 caatgggtttatgagtcctcttacttataag 5420704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 9507864 - 9507835
Alignment:
Q  214 aatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||||||||||||||||    
T  9507864 aatgggtttatgagtcctcttacttataag 9507835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 34834993 - 34834929
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| ||||||||||| |||||||||||||    
T  34834993 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcatcttacttataag 34834929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 30359690 - 30359662
Alignment:
Q  215 atgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||||||||||||||||    
T  30359690 atgggtttatgagtcctcttacttataag 30359662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 30441202 - 30441139
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataa 242  Q
    ||||||||||||||||| | ||||||| || |  ||||||||||||| | ||||||||||||||    
T  30441202 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggccctcttacttataa 30441139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 43779942 - 43779873
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctgtgcgagaaaaagtaattgtaactg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  43779942 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctgggagagaaaaagtaactgtaactg 43779873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 43779877 - 43779834
Alignment:
Q  98 aactgaaaaatgatgtgaatactatgctggatataatatatata 141  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  43779877 aactgaaaaatgatgtgaataatatgccggatataatatatata 43779834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 36178646 - 36178710
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  36178646 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 36178710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 15511536 - 15511599
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataa 242  Q
    ||||||||||||||||| | ||||||  ||  ||||||||||||||| ||||||||||||||||    
T  15511536 gagagacaccacactcttacccaaaatcttaagacaatgggtttatgggtcctcttacttataa 15511599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 14745708 - 14745772
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||| ||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  14745708 gagagacgccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 14745772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 15880380 - 15880316
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||| ||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  15880380 gagagacgccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 15880316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 28254278 - 28254342
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| ||||||| |||||||||||||||||    
T  28254278 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataag 28254342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 36178342 - 36178374
Alignment:
Q  211 gacaatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||||||| ||||||||||||    
T  36178342 gacaatgggtttatgagtccccttacttataag 36178374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 50720312 - 50720437
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctgtgcgagaaaaagtaattgtaactgcttttccactacgccaactgaaaaatgatg 112  Q
    |||||||||||||||||||||||||||||||||||||| |||||  || ||||||||      ||||||||||||||||  ||| || |||||||| |||    
T  50720312 aatataaaaaagggagaagatagaagagtcgaacacgcgacgtc--tgggagaaaaa------gtaactgcttttccaccgcgctaattgaaaaataatg 50720403  T
Q  113 tgaatactatgctggatataatatatatagaaac 146  Q
    | ||||  |||| |||||||||||||||||||||    
T  50720404 taaataacatgccggatataatatatatagaaac 50720437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 4955356 - 4955420
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||| ||||||||| | ||||||| || |  |||||||||||||||||||||||||||||||    
T  4955356 gagagacgccacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataag 4955420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 22028408 - 22028472
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||||||  ||||||| ||||||| ||||||||||| |||||    
T  22028408 gagagacaccacactcttacccaaaacattaagacaatgagtttatgggtcctcttactaataag 22028472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 55933163 - 55933227
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  55933163 gagagacaccacactcttacccaaaactttaaggcaatgggtttatgggtcctcttacttataag 55933227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 50630794 - 50630857
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataa 242  Q
    ||||||||||||||||| | ||||||| || |  ||||||||||||| ||||||||||||||||    
T  50630794 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 50630857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 12680087 - 12680153
Alignment:
Q  78 aactgcttttccactacgccaactgaaaaatgatgtgaatactatgctggatataatatatatagaaa 145  Q
    ||||||||||||||| ||| ||||| ||||| |||| |||| |||||  |||||||||||||||||||    
T  12680087 aactgcttttccactgcgctaactggaaaat-atgtaaataatatgcctgatataatatatatagaaa 12680153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 54109029 - 54108966
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt-gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| |  | ||||||||||||| |||||||||||||||||    
T  54109029 gagagacaccacactcttacccaaaacttaaggcaatgggtttatgggtcctcttacttataag 54108966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 25483453 - 25483389
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  |||||||||||||  ||||||||||||||||    
T  25483453 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatggatcctcttacttataag 25483389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 34646688 - 34646752
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| ||||||||||||||||| |||||||    
T  34646688 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttagttataag 34646752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 36629354 - 36629290
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| ||||||| |||||||||||||||||    
T  36629354 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataag 36629290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 41370474 - 41370410
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||| ||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  41370474 gagagacactacactcttacccaaaactttaaggcaatgggtttatgggtcctcttacttataag 41370410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 45496922 - 45496858
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| ||  ||||||| ||||||  |||||||||||||||||    
T  45496922 gagagacaccacactcttacccaaaaccttaagacaatgagtttataggtcctcttacttataag 45496858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 50002543 - 50002483
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttactta 239  Q
    ||||||||||||||||| | ||||||| ||  |||||||| |||||| |||||||||||||    
T  50002543 gagagacaccacactcttacccaaaaccttaagacaatggatttatgggtcctcttactta 50002483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 50459803 - 50459774
Alignment:
Q  214 aatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||||||||||||||||    
T  50459803 aatgggtttatgagtcctcttacttataag 50459774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 54936313 - 54936253
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttactta 239  Q
    ||||||||||||||||| | ||||||| || |  ||||||||||||| |||||||||||||    
T  54936313 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttactta 54936253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 22183303 - 22183366
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataa 242  Q
    ||||||| ||||||||| ||||||||| || |  ||||||||||||| ||||| ||||||||||    
T  22183303 gagagacgccacactcttatccaaaaccttaaggcaatgggtttatgggtccttttacttataa 22183366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 23817720 - 23817783
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataa 242  Q
    ||||||||||||||||| | ||||||| || |  ||||| |||||||| |||||||||||||||    
T  23817720 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgaatcctcttacttataa 23817783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 44352418 - 44352508
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctgtgcgagaaaaagtaattgtaactgcttttccactacgccaactgaaaaatgat 111  Q
    |||||||||||||||||||||||||||||||||||||| || ||  || ||||||||      ||||||||||||||||| ||| ||||| ||||||||    
T  44352418 aatataaaaaagggagaagatagaagagtcgaacacgcgacatc--tgggagaaaaa------gtaactgcttttccactgcgctaactggaaaatgat 44352508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 3550837 - 3550773
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  |||||||||||||||||||||||||||||||    
T  3550837 gagagacaccacactcttacccaaaactttaaggcaatgggtttatgagtcctcttacttataag 3550773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 29798316 - 29798252
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| |||||| || || |  |||||||||||||||||||||||||||||||    
T  29798316 gagagacaccacactcttatccaagaccttaaggcaatgggtttatgagtcctcttacttataag 29798252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 32594757 - 32594821
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| ||  ||||||| ||||||| |||||||||||||||||    
T  32594757 gagagacaccacactcttacccaaaaccttaagacaatgagtttatgggtcctcttacttataag 32594821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 17294694 - 17294631
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataa 242  Q
    ||||||||||||||||| | ||||||| || |  ||||||||||||| ||||||||||||||||    
T  17294694 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 17294631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 3875406 - 3875436
Alignment:
Q  213 caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||||||||||||||||||    
T  3875406 caatgggtttatgagtcctcttacttataag 3875436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 34365042 - 34364978
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  | ||||||||||| |||||||||||||||||    
T  34365042 gagagacaccacactcttacccaaaaccttaaggctatgggtttatgggtcctcttacttataag 34364978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 44043813 - 44043877
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||  ||  ||||||||||||||| ||| |||||||||||||    
T  44043813 gagagacaccacactcttacccaaaatcttaagacaatgggtttatgggtcatcttacttataag 44043877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 50052064 - 50052128
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| ||  || ||| |||||||| |||||||||||||||||    
T  50052064 gagagacaccacactcttacccaaaactttaagaaaataggtttatgggtcctcttacttataag 50052128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 24600355 - 24600418
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataa 242  Q
    ||||||||||||||||| |  |||||| ||  ||||||| |||||||||| |||||||||||||    
T  24600355 gagagacaccacactcttacacaaaaccttaagacaatgagtttatgagttctcttacttataa 24600418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 41157107 - 41157044
Alignment:
Q  182 agagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||| | ||||||| || |  ||||| ||||||| |||||||||||||||||    
T  41157107 agagacaccacactcttacccaaaaccttaaagcaatgagtttatgggtcctcttacttataag 41157044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 30244387 - 30244323
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  |||||||||||||||||||||||||||||||    
T  30244387 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataag 30244323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 34218075 - 34218139
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| ||  ||||||||||||||||||||||| |||||||||    
T  34218075 gagagacaccacactcttacccaaaaccttaagacaatgggtttatgagtcctctcacttataag 34218139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 11845308 - 11845244
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| ||||||||| || |  |||||| |||||| |||||||||||||||||    
T  11845308 gagagacaccacactcttatccaaaaccttaaggcaatggatttatgggtcctcttacttataag 11845244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 14681629 - 14681567
Alignment:
Q  179 gtgagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttactta 239  Q
    ||||||||||||||||||| | ||||||| ||  ||||||||||||||| | |||||||||||    
T  14681629 gtgagagacaccacactcttacccaaaaccttaagacaatgggtttatgggccctcttactta 14681567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 7517694 - 7517633
Alignment:
Q  184 agacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  7517694 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 7517633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 19122845 - 19122784
Alignment:
Q  184 agacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||| | ||||||| || |  |||||| ||||||||||||||||||||||||    
T  19122845 agacaccacactcttacccaaaaccttaaggcaatggatttatgagtcctcttacttataag 19122784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 23418 - 23482
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  |||| |||||||| |||||||||||||||||    
T  23418 gagagacaccacactcttacccaaaaccttaaggcaataggtttatgggtcctcttacttataag 23482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 6054677 - 6054613
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| ||||||| |||||||||||||||||    
T  6054677 gagagacaccacactcttacccaaaaccttaaggcaatgtgtttatgggtcctcttacttataag 6054613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 40094815 - 40094879
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||| ||||||||| | ||||||| ||  ||| ||||||||||| |||||||||||||||||    
T  40094815 gagagacgccacactcttacccaaaaccttaagacgatgggtttatgggtcctcttacttataag 40094879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 45754832 - 45754768
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  | ||||||||||||||| |||||||||||||    
T  45754832 gagagacaccacactcttacccaaaaccttaaggctatgggtttatgagtcatcttacttataag 45754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 1085657 - 1085720
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataa 242  Q
    ||||||| ||||||||| | ||||||| || |  ||||||||||||| ||||||||||||||||    
T  1085657 gagagacgccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataa 1085720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 37533406 - 37533469
Alignment:
Q  182 agagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||| | ||||||| || |  |||||| |||||| |||||||||||||||||    
T  37533406 agagacaccacactcttacccaaaaccttaaggcaatggatttatgggtcctcttacttataag 37533469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 16107795 - 16107731
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  |||||||||||||||||||||||||||||||    
T  16107795 gagagacaccacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataag 16107731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 2753552 - 2753509
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtc 56  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  2753552 aatataaaaaagggagaagaaggaagagtcgaacacgcgacgtc 2753509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 2377868 - 2377807
Alignment:
Q  184 agacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  2377868 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 2377807  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 32460655 - 32460685
Alignment:
Q  213 caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||||||||||||||||||    
T  32460655 caatgggtttatgagtcctcttacttataag 32460685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 1127442 - 1127413
Alignment:
Q  214 aatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||||||||||||||||    
T  1127442 aatgggtttatgagtcctcttacttataag 1127413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 3409376 - 3409312
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| ||||||| |||||||||||||||||    
T  3409376 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataag 3409312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 3409777 - 3409713
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | |||||| ||  |  ||||||||||||| |||||||||||||||||    
T  3409777 gagagacaccacactcttacccaaaaaataaaggcaatgggtttatgggtcctcttacttataag 3409713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 10074032 - 10074096
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||| | | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  10074032 gagagacaccacacttttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 10074096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 10074404 - 10074468
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| ||||||| |||||||||||||||||    
T  10074404 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataag 10074468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 10911683 - 10911619
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    |||||||| |||||||| || |||||| || |  ||||| |||||||||||||||||||||||||    
T  10911683 gagagacatcacactcttattcaaaactttaaggcaatgagtttatgagtcctcttacttataag 10911619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 13647257 - 13647193
Alignment:
Q  81 tgcttttccactacgccaactgaaaaatgatgtgaatactatgctggatataatatatatagaaac 146  Q
    |||||||||||| ||| |||  |||||| |||| |||| ||||| |||||||||||||||||||||    
T  13647257 tgcttttccactgcgctaaccaaaaaat-atgtaaataatatgccggatataatatatatagaaac 13647193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 16454692 - 16454628
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||| ||||||||| ||||||||  || |  ||||||||||||| |||||||||||||||||    
T  16454692 gagagacgccacactcttatccaaaatcttaaggcaatgggtttatgggtcctcttacttataag 16454628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 29518620 - 29518556
Alignment:
Q  181 gagagacaccacactctgatccaaaacattgac--aatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |   |||||||||||| |||||||||||||||||    
T  29518620 gagagacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataag 29518556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 29519037 - 29518973
Alignment:
Q  181 gagagacaccacactctgatccaaaacattgac--aatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |   |||||||||||| |||||||||||||||||    
T  29519037 gagagacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataag 29518973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 32741296 - 32741232
Alignment:
Q  181 gagagacaccacactctgatccaaaacattgac--aatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |   |||||||||||| |||||||||||||||||    
T  32741296 gagagacaccacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataag 32741232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 1846864 - 1846801
Alignment:
Q  182 agagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||||| ||||||||| ||  | |||||| |||||| || ||||||||||||||    
T  1846864 agagacaccacactcttatccaaaaccttaaggcaatggatttatgggtgctcttacttataag 1846801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 9062422 - 9062454
Alignment:
Q  211 gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||| |||||||||||||||||||||||||    
T  9062422 gacaatgagtttatgagtcctcttacttataag 9062454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 12114603 - 12114667
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| ||  ||||||||||||||| |||||||||||||||||    
T  12114603 gagagacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataag 12114667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 21434065 - 21433998
Alignment:
Q  78 aactgcttttccactacgccaactgaaaaatgatgtgaatactatgctggatataatatatatagaaac 146  Q
    ||||||||||||||| ||| ||||  ||||| |||| |||||||||| |||||||||||||||||||||    
T  21434065 aactgcttttccactgcgctaactagaaaat-atgtaaatactatgccggatataatatatatagaaac 21433998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 45395694 - 45395757
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataa 242  Q
    ||||||||||||||||| | ||||||||||  |||||||||||||||  |||||||||||||||    
T  45395694 gagagacaccacactcttacccaaaacattaagacaatgggtttatggatcctcttacttataa 45395757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 15772971 - 15772907
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| ||||||||| || |  ||||| ||||||| |||||||||||||||||    
T  15772971 gagagacaccacactcttatccaaaaccttaaagcaatgagtttatgggtcctcttacttataag 15772907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 22303996 - 22304060
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| ||||||||| ||  | ||||||||||||| |||| ||||||||||||    
T  22303996 gagagacaccacactcttatccaaaaccttaaggcaatgggtttatgggtccgcttacttataag 22304060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 29644943 - 29645007
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||| ||||||||| | ||||||| ||  ||||||||||||||| |||||||||||||||||    
T  29644943 gagagacgccacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataag 29645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 37990680 - 37990744
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| |||||||||||||||||||||||||    
T  37990680 gagagacaccacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttacttataag 37990744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 19237316 - 19237256
Alignment:
Q  84 ttttccactacgccaactgaaaaatgatgtgaatactatgctggatataatatatatagaa 144  Q
    |||||||||| || ||||| |||||||||| |||| ||| | |||||||||||||||||||    
T  19237316 ttttccactatgctaactggaaaatgatgtaaataatataccggatataatatatatagaa 19237256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 22304686 - 22304622
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||||||| || |  ||||| ||||||| |||||||||||||||||    
T  22304686 gagagacaccacactcttacccaaaaccttaaggcaatgtgtttatgggtcctcttacttataag 22304622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 29644622 - 29644686
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||| ||||||||| | ||||||| ||  ||||||||||||||| || ||||||||||||||    
T  29644622 gagagacgccacactcttacccaaaaccttaagacaatgggtttatgggttctcttacttataag 29644686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 32462941 - 32463005
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| |  |||||| || |  ||||||||||||||||| |||||||||||||    
T  32462941 gagagacaccacactcttactcaaaaccttaaggcaatgggtttatgagtcttcttacttataag 32463005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 42342131 - 42342195
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||| ||||||||| | ||||||| || |  ||||| |||||||||||||||||||||||||    
T  42342131 gagagacgccacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttacttataag 42342195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 48757721 - 48757766
Alignment:
Q  13 aatataaaaaagggagaagatagaagagtcgaacacgcaacgtctg 58  Q
    ||||||||||||||||||||  ||||| |||||| |||||||||||    
T  48757721 aatataaaaaagggagaagaaggaagaatcgaacccgcaacgtctg 48757766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 49336728 - 49336792
Alignment:
Q  181 gagagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| | ||| ||| ||  ||| ||||||||||| |||||||||||||||||    
T  49336728 gagagacaccacactcttacccagaactttaagactatgggtttatgggtcctcttacttataag 49336792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 19269585 - 19269652
Alignment:
Q  78 aactgcttttccactacgccaactgaaaaatgatgtgaatactatgctggatataatatatatagaaac 146  Q
    ||||||||||||||||||| | ||| ||||| |||| ||||  ||||  ||||||||||||||||||||    
T  19269585 aactgcttttccactacgctagctggaaaat-atgtaaataaaatgcctgatataatatatatagaaac 19269652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 25755479 - 25755447
Alignment:
Q  211 gacaatgggtttatgagtcctcttacttataag 243  Q
    |||||||| ||||||||||||||||||||||||    
T  25755479 gacaatggatttatgagtcctcttacttataag 25755447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 39389186 - 39389131
Alignment:
Q  182 agagacaccacactctgatccaaaacatt--gacaatgggtttatgagtcctctta 235  Q
    |||||||||||||||| | ||||||| ||  ||||||||||||||| |||||||||    
T  39389186 agagacaccacactcttacccaaaaccttaagacaatgggtttatgggtcctctta 39389131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 5474 - 5410
Alignment:
Q  181 gagagacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    ||||||||||||||||| ||||||||  || |  ||||||||||||| |||||||||||||||||    
T  5474 gagagacaccacactcttatccaaaatcttaaggcaatgggtttatgggtcctcttacttataag 5410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 558 - 619
Alignment:
Q  184 agacaccacactctgatccaaaacattga--caatgggtttatgagtcctcttacttataag 243  Q
    |||||||||||||| | ||||||| || |  ||||||||||||| |||||||||||||||||    
T  558 agacaccacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataag 619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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