View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_40 (Length: 231)
Name: NF19556_low_40
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 40178823 - 40179029
Alignment:
| Q |
9 |
cgaagaatattgaatccttctttggaagttcattcattagagtaaaagcacatttt-ttgctatatgaatgaatgaaagtatctcatctttcattctcat |
107 |
Q |
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| T |
40178823 |
cgaaaaatattgaatccttctttggaagttcattcattagagtaaaagcacatttttttgctatatgaatgaatgaaagtatctcatctttcattctcat |
40178922 |
T |
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| Q |
108 |
ttctcaaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgagtctccaactacaccagttggagcacaac |
207 |
Q |
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| T |
40178923 |
ttctcaaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgagtctccaactacaccagttggagcacaac |
40179022 |
T |
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| Q |
208 |
cagtaga |
214 |
Q |
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||||||| |
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| T |
40179023 |
cagtaga |
40179029 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 6226477 - 6226411
Alignment:
| Q |
113 |
aaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgag |
179 |
Q |
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| T |
6226477 |
aaagcttaacataatgtcagaaatgtgtgaaccaaattcagagaaagttggtgaaattagtgctgag |
6226411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 6226550 - 6226478
Alignment:
| Q |
16 |
tattgaatccttctttggaagttcattca-ttagagtaaaagcaca-ttttttgctatatgaatgaatgaaag |
86 |
Q |
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| T |
6226550 |
tattgaatccttctttgaaagttcattcacttagtgtaaaagcacatttttttactatatgaatgaatgaaag |
6226478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 1786699 - 1786637
Alignment:
| Q |
113 |
aaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgag |
179 |
Q |
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|||||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||| |
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| T |
1786699 |
aaagtttaacataacgtcagagatgtgtggaccaatttcagagaa----agtgaaattagtgctgag |
1786637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 4804170 - 4804232
Alignment:
| Q |
26 |
ttctttggaagttcattca-ttagagtaaaagcacat-tttttgctatatgaatgaatgaaag |
86 |
Q |
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||||||| ||||||||||| ||||||| |||||| || ||||| ||||||||||||||||||| |
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| T |
4804170 |
ttctttgaaagttcattcacttagagttaaagcagatatttttactatatgaatgaatgaaag |
4804232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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