View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19556_low_6 (Length: 445)

Name: NF19556_low_6
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19556_low_6
NF19556_low_6
[»] chr2 (9 HSPs)
chr2 (20-295)||(2360277-2360552)
chr2 (329-421)||(2360586-2360678)
chr2 (137-186)||(36114581-36114630)
chr2 (130-186)||(11513861-11513917)
chr2 (138-184)||(14220880-14220926)
chr2 (132-186)||(43199377-43199431)
chr2 (200-248)||(39659643-39659689)
chr2 (130-178)||(1625871-1625919)
chr2 (200-247)||(41407191-41407236)
[»] chr5 (6 HSPs)
chr5 (200-248)||(19460511-19460557)
chr5 (128-188)||(10272480-10272540)
chr5 (130-185)||(6587158-6587213)
chr5 (131-186)||(9202800-9202855)
chr5 (130-187)||(12425533-12425590)
chr5 (150-186)||(12595811-12595847)
[»] chr7 (6 HSPs)
chr7 (130-186)||(1417227-1417283)
chr7 (152-186)||(30180014-30180048)
chr7 (130-186)||(9527141-9527197)
chr7 (200-247)||(21568763-21568808)
chr7 (130-186)||(39967883-39967939)
chr7 (130-186)||(48470007-48470063)
[»] chr6 (9 HSPs)
chr6 (130-186)||(9093607-9093663)
chr6 (132-186)||(2112164-2112217)
chr6 (130-183)||(415270-415323)
chr6 (46-91)||(13907972-13908016)
chr6 (133-186)||(28621164-28621217)
chr6 (130-186)||(2735032-2735088)
chr6 (130-186)||(4248921-4248977)
chr6 (130-186)||(8147665-8147721)
chr6 (150-186)||(24836270-24836306)
[»] chr3 (11 HSPs)
chr3 (130-186)||(37788823-37788879)
chr3 (129-186)||(10101526-10101583)
chr3 (129-186)||(10212451-10212508)
chr3 (128-186)||(10357396-10357454)
chr3 (130-184)||(14145877-14145931)
chr3 (130-179)||(21367637-21367686)
chr3 (200-248)||(31365407-31365453)
chr3 (150-186)||(15304418-15304454)
chr3 (130-186)||(30956677-30956733)
chr3 (130-186)||(30972489-30972545)
chr3 (130-186)||(36783385-36783441)
[»] chr1 (9 HSPs)
chr1 (130-186)||(49888730-49888786)
chr1 (130-186)||(28467358-28467414)
chr1 (131-186)||(36070213-36070268)
chr1 (152-186)||(38160076-38160110)
chr1 (130-179)||(17269220-17269269)
chr1 (130-186)||(5592736-5592792)
chr1 (132-188)||(7218127-7218183)
chr1 (153-189)||(8081847-8081883)
chr1 (130-186)||(27738231-27738287)
[»] chr4 (6 HSPs)
chr4 (131-186)||(25885822-25885877)
chr4 (132-186)||(3155566-3155620)
chr4 (132-182)||(6927546-6927596)
chr4 (200-248)||(30377817-30377863)
chr4 (130-186)||(17884031-17884087)
chr4 (130-186)||(52746891-52746947)
[»] scaffold0024 (2 HSPs)
scaffold0024 (152-223)||(21351-21426)
scaffold0024 (132-184)||(27541-27593)
[»] chr8 (6 HSPs)
chr8 (130-184)||(2595048-2595102)
chr8 (130-180)||(7514547-7514597)
chr8 (200-248)||(14956430-14956476)
chr8 (130-186)||(34770855-34770911)
chr8 (200-251)||(37353373-37353422)
chr8 (130-186)||(41336696-41336752)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 2360277 - 2360552
Alignment:
Q  20 gctttgtgattgatatatatgagatctgtttgaattagacttagttgaacttttctactagcataagcacttttaaattttgatattatttgagcgaact 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  2360277 gctttgtgattgatatatatgagatctgtttgaattagacttagttgaacttttctactagcataagcacctttgaattttgatattatttgagcgaact 2360376  T
Q  120 tatgaagttggcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatcttttatgaaaatatgtttacataagtgcttatcatga 219  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2360377 tatgaagttggcttatgaaaacaacttgttgtttatgcgaaaacaattgaactttattttatcttttatgaaaatatatttacataagtgcttatcatga 2360476  T
Q  220 taagcatttgtgtgctataagctgcaaatcaaatttagttgtttatctaaaaagggtcttaatggttgatctaaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2360477 taagcatttgtgtgctataagctgcaaatcaaatttagttgtttatctaaaaagggtcttaatggttgatctaaaa 2360552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 329 - 421
Target Start/End: Original strand, 2360586 - 2360678
Alignment:
Q  329 gcccaggatttgaaggggtgatctgtgtagttcaataatggttgttagggcttctaaaagaaaaaagttgctgaatttatatgactctaagtc 421  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2360586 gcccaggatttgaaggggtgatctttgtagttcaataatggttgttaggtcttctaaaagaaaaaagttgctgaatttatatgactctaagtc 2360678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 36114581 - 36114630
Alignment:
Q  137 aaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||| ||| |||||| ||||||||| ||||||||||||||||||    
T  36114581 aaaacaacttattgcttatacaaaaacaatttaactttattttatctttt 36114630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 11513917 - 11513861
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||| | | ||||| ||||||||||  |||||||||||||||||    
T  11513917 gcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatctttt 11513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 14220880 - 14220926
Alignment:
Q  138 aaacaacttgttgtttatacgaaaacaattgaactttattttatctt 184  Q
    ||||||||| |||||||||| |||||| || ||||||||||||||||    
T  14220880 aaacaacttattgtttataccaaaacagtttaactttattttatctt 14220926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 43199431 - 43199377
Alignment:
Q  132 ttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||| | | ||||||||| | |||| ||||||||||||||||||    
T  43199431 ttatgaaaacaacttatagcttatacgaagataatttaactttattttatctttt 43199377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 39659643 - 39659689
Alignment:
Q  200 tacataagtgcttatcatgataagcatttgtgtgctataagctgcaaat 248  Q
    |||||||| |||||||||||||||||||  |||||| ||||||||||||    
T  39659643 tacataagcgcttatcatgataagcatt--tgtgctctaagctgcaaat 39659689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 1625919 - 1625871
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattt 178  Q
    ||||||||||||||||| |   |||||||||||||||| ||||||||||    
T  1625919 gcttatgaaaacaacttataacttatacgaaaacaatttaactttattt 1625871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 41407236 - 41407191
Alignment:
Q  200 tacataagtgcttatcatgataagcatttgtgtgctataagctgcaaa 247  Q
    |||||||||||||||||||||||||  |  ||||||||||||||||||    
T  41407236 tacataagtgcttatcatgataagcgct--tgtgctataagctgcaaa 41407191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 19460511 - 19460557
Alignment:
Q  200 tacataagtgcttatcatgataagcatttgtgtgctataagctgcaaat 248  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  19460511 tacataagtgcttatcatgataagcatt--tgtgctataagctgcaaat 19460557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 10272480 - 10272540
Alignment:
Q  128 tggcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatcttttat 188  Q
    ||||||||||||||||||| | | ||||||||||||||||  |||| ||||||||||||||    
T  10272480 tggcttatgaaaacaacttatagcttatacgaaaacaatttgacttaattttatcttttat 10272540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 6587158 - 6587213
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatcttt 185  Q
    ||||||||||||||||| | | ||||||||||||||||||| ||||||| ||||||    
T  6587158 gcttatgaaaacaacttatagcttatacgaaaacaattgaagtttatttaatcttt 6587213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 9202800 - 9202855
Alignment:
Q  131 cttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||| ||| ||| ||||| |||||||||| ||||||||||||||||||    
T  9202800 cttatgaaaacagcttattgcttatatgaaaacaatttaactttattttatctttt 9202855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 12425590 - 12425533
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttta 187  Q
    |||| |||||||| ||| | | |||||||||||||||| |||||||||||||||||||    
T  12425590 gcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattttatctttta 12425533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 12595811 - 12595847
Alignment:
Q  150 gtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  12595811 gtttatatgaaaacaatttaactttattttatctttt 12595847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 1417283 - 1417227
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||| ||| ||||| ||||||||||  |||||||||||||||||    
T  1417283 gcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatctttt 1417227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 30180048 - 30180014
Alignment:
Q  152 ttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||||| ||||||||||||||||||    
T  30180048 ttatacgaaaacaatttaactttattttatctttt 30180014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 9527141 - 9527197
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||| | ||||||| ||||||| ||  |||||||| ||||||||    
T  9527141 gcttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatctttt 9527197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 21568763 - 21568808
Alignment:
Q  200 tacataagtgcttatcatgataagcatttgtgtgctataagctgcaaa 247  Q
    |||||||||||||||||||||||||| |  | ||||||||||||||||    
T  21568763 tacataagtgcttatcatgataagcact--tatgctataagctgcaaa 21568808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 39967939 - 39967883
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||| | | |  ||||||||||||| || |||||||||||||||    
T  39967939 gcttatgaaaacaacttatagctagtacgaaaacaatttaagtttattttatctttt 39967883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 48470063 - 48470007
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||| |  | ||||| ||||||||| ||||| ||||||||||||    
T  48470063 gcttatgaaaacaacttatattatatacaaaaacaatttaacttaattttatctttt 48470007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 9093607 - 9093663
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||| ||| | | |||||||||||||||| ||||||||||||||||||    
T  9093607 gcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatctttt 9093663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 2112217 - 2112164
Alignment:
Q  132 ttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||| | ||||||| |||| ||||| ||||||||||||||||||    
T  2112217 ttatgaaaacaacttatagtttatatgaaa-caatttaactttattttatctttt 2112164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 415323 - 415270
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatct 183  Q
    |||||| |||||||||| | | |||||||||||||||| |||||| ||||||||    
T  415323 gcttataaaaacaacttatagcttatacgaaaacaatttaactttgttttatct 415270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 13908016 - 13907972
Alignment:
Q  46 tgtttgaattagacttagttgaacttttctactagcataagcactt 91  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||    
T  13908016 tgtttgaatt-gacttatttgaacttttctactaacataagcactt 13907972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 28621164 - 28621217
Alignment:
Q  133 tatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||| ||||| ||||| | |||||| ||||||||| ||||||||||||||||||    
T  28621164 tatgtaaacatcttgtagcttatacaaaaacaatttaactttattttatctttt 28621217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 2735088 - 2735032
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||| ||| | | |||||| |||| |||| ||||||||||||||||||    
T  2735088 gcttatgaaaacagcttatagattatacaaaaataatttaactttattttatctttt 2735032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 4248977 - 4248921
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||| ||||||| ||| |||||||||| ||| |||||  |||||||||||||||||    
T  4248977 gcttaggaaaacaccttattgtttatacaaaatcaatttgactttattttatctttt 4248921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 8147721 - 8147665
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||| ||| | |  ||||| ||||||||| ||||||||||||||||||    
T  8147721 gcttatgaaaacatcttttagaatatacaaaaacaattcaactttattttatctttt 8147665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 24836270 - 24836306
Alignment:
Q  150 gtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||||  |||||||||||||||||    
T  24836270 gtttatacgaaaacaatttgactttattttatctttt 24836306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 37788879 - 37788823
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||| | | ||||||||||| ||||| |||||||||||||||||    
T  37788879 gcttatgaaaacaacttatagattatacgaaaataattggactttattttatctttt 37788823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 10101526 - 10101583
Alignment:
Q  129 ggcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||||||| |   ||||| |||||||||| ||||||||||||||||||    
T  10101526 ggcttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatctttt 10101583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 10212451 - 10212508
Alignment:
Q  129 ggcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||||||| |   ||||| |||||||||| ||||||||||||||||||    
T  10212451 ggcttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatctttt 10212508  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 10357454 - 10357396
Alignment:
Q  128 tggcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||||||||||   ||||| ||||| |||| ||| ||||||||||||||    
T  10357454 tggcttatgaaaacaacttgtatcttatatgaaaaaaatttaacattattttatctttt 10357396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 14145931 - 14145877
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctt 184  Q
    ||||||||||| ||||| | |  ||||||||||||||| ||||||||||||||||    
T  14145931 gcttatgaaaataacttatagcatatacgaaaacaatttaactttattttatctt 14145877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 21367686 - 21367637
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttatttt 179  Q
    ||||||||||||||||| |   |||||||||||||||| |||||||||||    
T  21367686 gcttatgaaaacaacttatacattatacgaaaacaatttaactttatttt 21367637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 31365407 - 31365453
Alignment:
Q  200 tacataagtgcttatcatgataagcatttgtgtgctataagctgcaaat 248  Q
    ||||||||||||||||||||||| || |  |||||||||||||||||||    
T  31365407 tacataagtgcttatcatgataatcact--tgtgctataagctgcaaat 31365453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 15304418 - 15304454
Alignment:
Q  150 gtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  15304418 gtttatatgaaaacaatttaactttattttatctttt 15304454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 30956677 - 30956733
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||| |||||||||||| | |  ||||| ||||||||| ||||||||||||||||||    
T  30956677 gcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatctttt 30956733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 30972489 - 30972545
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||| |||||||||||| | |  ||||| ||||||||| ||||||||||||||||||    
T  30972489 gcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatctttt 30972545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 36783385 - 36783441
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||| ||  | ||||||| ||||||||||  |||||||||||||||||    
T  36783385 gcttatgaaaacagctaatagtttatatgaaaacaattttactttattttatctttt 36783441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 49888786 - 49888730
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||  | | |||||||||||||||| ||||||||||||||||||    
T  49888786 gcttatgaaaacaactaatagcttatacgaaaacaattaaactttattttatctttt 49888730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 28467358 - 28467414
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||||| | ||||| ||||| ||||  |||||||||||||||||    
T  28467358 gcttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatctttt 28467414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 36070268 - 36070213
Alignment:
Q  131 cttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||||| | | |||| |||| |||||| ||||||||||||||||||    
T  36070268 cttatgaaaacaacttatagcttatccgaagacaatttaactttattttatctttt 36070213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 38160076 - 38160110
Alignment:
Q  152 ttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||||||||||||| ||||||||||    
T  38160076 ttatacgaaaacaattgaactttagtttatctttt 38160110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 17269269 - 17269220
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttatttt 179  Q
    ||||||||||||||||| ||| ||||| ||||||||||  ||||||||||    
T  17269269 gcttatgaaaacaacttattgcttatatgaaaacaatttgactttatttt 17269220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 5592736 - 5592792
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||| | | ||||| || |||||||  |||||||||||||||||    
T  5592736 gcttatgaaaacaacttatagcttatatgacaacaattcgactttattttatctttt 5592792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 7218127 - 7218183
Alignment:
Q  132 ttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatcttttat 188  Q
    ||||||||||||||| | | ||||| ||||||||||  ||||||||||| |||||||    
T  7218127 ttatgaaaacaacttatagcttatatgaaaacaatttgactttattttaccttttat 7218183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 8081883 - 8081847
Alignment:
Q  153 tatacgaaaacaattgaactttattttatcttttatg 189  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  8081883 tatacaaaaacaatttaactttattttatcttttatg 8081847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 27738231 - 27738287
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||| || | | ||||| ||||||||||  |||||||||||||||||    
T  27738231 gcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatctttt 27738287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 25885877 - 25885822
Alignment:
Q  131 cttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||||| | | ||| |||||||||||| ||||||||||||||||||    
T  25885877 cttatgaaaacaacttatagcttacacgaaaacaatttaactttattttatctttt 25885822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 3155620 - 3155566
Alignment:
Q  132 ttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||| ||||| | || ||| ||||||||| ||||||||||||||||||    
T  3155620 ttatgaaaacagcttgtagcttgtacaaaaacaatttaactttattttatctttt 3155566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 6927546 - 6927596
Alignment:
Q  132 ttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatc 182  Q
    ||||||||||||||| | ||||| | |||||||||| ||||||||||||||    
T  6927546 ttatgaaaacaacttatagtttacatgaaaacaatttaactttattttatc 6927596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 30377817 - 30377863
Alignment:
Q  200 tacataagtgcttatcatgataagcatttgtgtgctataagctgcaaat 248  Q
    |||| |||||||||||||||||| ||||  |||||||||||||||||||    
T  30377817 tacacaagtgcttatcatgataaacatt--tgtgctataagctgcaaat 30377863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 17884087 - 17884031
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||  |   |||||| ||||||||| ||||||||||||||||||    
T  17884087 gcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatctttt 17884031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 52746891 - 52746947
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||| ||| | | ||| || ||||||||| ||||||||||||||||||    
T  52746891 gcttatgaaaacagcttatggcttacacaaaaacaatttaactttattttatctttt 52746947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 21351 - 21426
Alignment:
Q  152 ttatacgaaaacaattgaactttattttatcttt---tatgaaaatatgtt-tacataagtgcttatcatgataag 223  Q
    |||||||||||||||| |||||||||||||||||   ||| ||||||  || ||||||||||||||||||| ||||    
T  21351 ttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataagtgcttatcatggtaag 21426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 27593 - 27541
Alignment:
Q  132 ttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctt 184  Q
    ||||||||||||||| | ||||||| ||||||||||  |||||||||||||||    
T  27593 ttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatctt 27541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 2595048 - 2595102
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctt 184  Q
    ||||||||||||||||| | | |  ||||||||||||| ||||||||||||||||    
T  2595048 gcttatgaaaacaacttatggctagtacgaaaacaatttaactttattttatctt 2595102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 7514597 - 7514547
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttatttta 180  Q
    ||||||||||||| ||||| | ||||| |||||||||||||| ||||||||    
T  7514597 gcttatgaaaacagcttgtagcttatatgaaaacaattgaacattatttta 7514547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 14956430 - 14956476
Alignment:
Q  200 tacataagtgcttatcatgataagcatttgtgtgctataagctgcaaat 248  Q
    |||||||||||||||||||||||||  |  |||||||||||||||||||    
T  14956430 tacataagtgcttatcatgataagcgat--tgtgctataagctgcaaat 14956476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 34770911 - 34770855
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    ||||||||||||||||| | | ||| | ||||||||||  |||||||||||||||||    
T  34770911 gcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatctttt 34770855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 37353373 - 37353422
Alignment:
Q  200 tacataagtgcttatcatgataagcatttgtgtgctataagctgcaaatcaa 251  Q
    |||||||| ||||||||| |||||||||| ||  ||||||||||||||||||    
T  37353373 tacataagcgcttatcatcataagcatttatg--ctataagctgcaaatcaa 37353422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 41336696 - 41336752
Alignment:
Q  130 gcttatgaaaacaacttgttgtttatacgaaaacaattgaactttattttatctttt 186  Q
    |||||||||||||| || | ||||||| ||||||||||  ||| |||||||||||||    
T  41336696 gcttatgaaaacaagttctagtttatatgaaaacaatttgactatattttatctttt 41336752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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