View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_8 (Length: 423)
Name: NF19556_low_8
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 41154055 - 41154448
Alignment:
| Q |
16 |
atactagataacttaatttgagatgaagataaatttaagctaatggaccaagtaaacaagtnnnnnnngttcatttacgaattcaagtataactataaga |
115 |
Q |
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| T |
41154055 |
atactagataacttaatttgagatgaagataaatttaagctaatggaccaagtaaacaagtaaaaaaagttcatttacgaattcaagtataactataaga |
41154154 |
T |
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| Q |
116 |
gtcacttttt--catatttgacatcaagataaatttaagccaatagaccaagtaaacaagtnnnnnnnnttc-atttacgatttcaaatataggagtcac |
212 |
Q |
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| T |
41154155 |
gtcactttttttcatatttgacatcaagataaatttaagtcaatagaccaagtaaacaagtaaaaaaaaatccatttacgatttcaaatataggagtcac |
41154254 |
T |
|
| Q |
213 |
ttttttcatatactgagtcacttatttatttacctcatttctcgtccatgtaagactatcactcacatttgaatttcaattaaaaaatgcaaaccatata |
312 |
Q |
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| T |
41154255 |
ttttttcatatac-gagtcacttatttatttacctcatttctcgtccatgtaagactatcactcacatttaaattccaattaaaaattgcaaatcatata |
41154353 |
T |
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| Q |
313 |
ttttagtttgcacttccagctgtttcattttggctccttcgtgatgtttgacattataaaacacaattgtgtttgttatttgcgttttttatgta |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41154354 |
ttttagtttgcacttccagctgtttcattttggctccttcgtgatgtttgacattataaaacacaattgtgtttgttatttgcgttttttatgta |
41154448 |
T |
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