View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19556_low_9 (Length: 413)
Name: NF19556_low_9
Description: NF19556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19556_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 48754655 - 48754292
Alignment:
| Q |
14 |
agagataacacaccacaataaacaaatacaaaatgaaatcgagtcaaaatctcgtcagtcccagctgaaatcctgcagctctcaaatttgtacggctaga |
113 |
Q |
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| T |
48754655 |
agagacaacacaccacaataaacaaataaaaaatgaaatcgagtcaaaatctcgtcagtcccagctgaaatcctgcagctctcaaatttgtacggctaga |
48754556 |
T |
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| Q |
114 |
acaaaatatcccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgaaaatctggattaagtt |
213 |
Q |
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| T |
48754555 |
acaaaatatcccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgtaaatctggattaagtt |
48754456 |
T |
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| Q |
214 |
tggccaaattaagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagcaaggatatcaattgcagtcgtgt |
313 |
Q |
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| T |
48754455 |
tggccaaattaagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagcaaggatatcaattgcagtcgtgt |
48754356 |
T |
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| Q |
314 |
tgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgtcacaatcatcatatgtagttaatac |
399 |
Q |
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| T |
48754355 |
tgtaat----------------------tcaagatcgggtcacaataatcaatgtcaatgtcacaatcatcatatgtagttaatac |
48754292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 49053265 - 49053124
Alignment:
| Q |
80 |
gaaatcctgcagctctcaaatttgtacggctagaacaaaatatccc-accctctatttattccttcagggtttcaataagggttacccagcaaattcaga |
178 |
Q |
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| T |
49053265 |
gaaaccctgcaggtctcgaatttgtacagctagaacaaaatatccccaccctctattttttccttcagagtctcaataagggttacccaacaaactcaga |
49053166 |
T |
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| Q |
179 |
tacacaggtattgcaatgaaaatctggattaagtttggccaa |
220 |
Q |
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| T |
49053165 |
tacacaggtattgcaatcaatttctgaatcaagtttggccaa |
49053124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 282 - 389
Target Start/End: Complemental strand, 49053051 - 49052947
Alignment:
| Q |
282 |
tgctaaagcaaggatatcaattgcagtcgtgttgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgtcacaatc |
381 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||| || || ||||||||||||||||||||| |||||||||| |
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| T |
49053051 |
tgctaaagcaaggatttcaattgcagtcgcgttgtaattaaattcacgc-aaaagagcggcca--atagggtcacaataatcaatgtcaatgtcacaatc |
49052955 |
T |
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| Q |
382 |
atcatatg |
389 |
Q |
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|| ||||| |
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| T |
49052954 |
attatatg |
49052947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 29031700 - 29031626
Alignment:
| Q |
72 |
tcccagctgaaatcctgcagctctcaaatttgtacggctagaacaaaatatcccaccctctatttattccttcag |
146 |
Q |
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|||||| ||||| ||| |||||||| |||||| || |||||||||||||||| |||||||| || ||||||||| |
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| T |
29031700 |
tcccagatgaaaccctacagctctcgaatttggactgctagaacaaaatatctcaccctcttttctttccttcag |
29031626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 35914736 - 35914688
Alignment:
| Q |
213 |
ttggccaaattaagtaacattgattcacaactacgcaatcatagatcca |
261 |
Q |
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||||||||| ||| |||||||||||||||||| ||||||| ||||||| |
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| T |
35914736 |
ttggccaaactaaagaacattgattcacaactaagcaatcaaagatcca |
35914688 |
T |
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