View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19557_high_1 (Length: 228)
Name: NF19557_high_1
Description: NF19557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19557_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 44071732 - 44071931
Alignment:
| Q |
15 |
cacagaaaccctaaaactcttgagaagcagatccaatttcccctttcccttttccaaccttcttaggaagcaatgtctgatgaatattgggcaaaacacc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44071732 |
cacagaaaccctaaaactcttgagaagcagatccaatttcccctttcccttttccaactttcttaggaagcaatgtctgatgaatattgggcaaaacacc |
44071831 |
T |
|
| Q |
115 |
accattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44071832 |
accattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttg |
44071931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 47039658 - 47039461
Alignment:
| Q |
17 |
cagaaaccctaaaactcttgagaagcagatccaatttcccctttcccttttccaaccttcttaggaagcaatgtctgatgaatattgggcaaaacaccac |
116 |
Q |
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||||||||||| || |||||||| |||||||||||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
47039658 |
cagaaaccctagaattcttgagacgcagatccaatttctccttttccctttccaaccttcttagggagcaaagtctgatgaatattgggcaaaacaccac |
47039559 |
T |
|
| Q |
117 |
cattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttg |
214 |
Q |
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||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||||| |
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| T |
47039558 |
cattagcaatggtcacagttcccaaaagcttgctgagttcctcgtcgttcctcactgcaagctgaatgtgccttggtacaatacggttcttcttgttg |
47039461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 47033373 - 47033177
Alignment:
| Q |
18 |
agaaaccctaaaactcttgagaagcagatccaatttcccctttcccttttccaaccttcttaggaagcaatgtctgatgaatattgggcaaaacaccacc |
117 |
Q |
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|
||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
47033373 |
agaaaccctaaaattcttgagaagcagatccaatttctcctttgccctttccaaccttcttaggaagcaaagtctgatgaatattgggcagaacaccacc |
47033274 |
T |
|
| Q |
118 |
attagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaacaattcgattcttcttgttg |
214 |
Q |
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|||||||||||| |||| ||| |||||||||||||||||||| || || || |||||||||||||| |||||||| ||||| || |||||||||||| |
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| T |
47033273 |
attagcaatggtcacagttcctaaaagcttgctgagttcttcatcgtttctaacagcaagctgaatgtgccttggtacaatacggttcttcttgttg |
47033177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 47035268 - 47035436
Alignment:
| Q |
15 |
cacagaaaccctaaaactcttgagaagcagatccaatttcccctttcccttttccaaccttcttaggaagcaatgtctgatgaatattgggcaaaacacc |
114 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| |||| || || ||| |||||| || ||||| ||||||||||| || ||||||||||| |
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| T |
47035268 |
cacataaaccctaaaattcttgagaagcagatccaatttcggcttttcccttcccagacttctttggcagcaaagtctgatgaatgttaggcaaaacacc |
47035367 |
T |
|
| Q |
115 |
accattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaat |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |
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| T |
47035368 |
accattagcaatggttacagctcccaaaagcttgcttagttcttcatcgttcctaacagcaagttgaat |
47035436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 37367515 - 37367644
Alignment:
| Q |
69 |
caaccttcttaggaagcaatgtctgatgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcct |
168 |
Q |
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|
|||||||||| || | ||| ||||| ||||| || ||||||||||||||||||||||| || ||| |||||| | ||||| | |||||| || ||||| |
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| T |
37367515 |
caaccttctttggcaacaaagtctggtgaatgttaggcaaaacaccaccattagcaatagtcacatgtcccaacaatttgctcaattcttcatcgttcct |
37367614 |
T |
|
| Q |
169 |
cacagcaagctgaatatgccttggaacaat |
198 |
Q |
| |
|
|||||| || |||| |||||||| ||||| |
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| T |
37367615 |
cacagcgagttgaaggtgccttggtacaat |
37367644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 2577855 - 2577971
Alignment:
| Q |
95 |
tgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaa |
194 |
Q |
| |
|
|||||||| ||| |||||| ||||| |||||||| ||| | || | ||||||||| | |||||| || ||||||||| | | |||||||||||||| | |
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| T |
2577855 |
tgaatattttgcataacaccgccattggcaatggtaacatcaccaagaagcttgctcaattcttcatcgttcctcacaaccaattgaatatgccttggca |
2577954 |
T |
|
| Q |
195 |
caattcgattcttcttg |
211 |
Q |
| |
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|||||||| | |||||| |
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| T |
2577955 |
caattcgaattttcttg |
2577971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 34615692 - 34615573
Alignment:
| Q |
95 |
tgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaa |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| | || | ||||||||| | |||||| || ||||||||||| | ||||| || ||||| | |
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|
| T |
34615692 |
tgaatattgggcataacaccaccattagcaatggtaacatcaccaagaagcttgctcaattcttcatcgttcctcacagccaattgaatgtgtcttggca |
34615593 |
T |
|
| Q |
195 |
caattcgattcttcttgttg |
214 |
Q |
| |
|
|||||| ||||||||||| |
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|
| T |
34615592 |
caattcttgtcttcttgttg |
34615573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 34622874 - 34622755
Alignment:
| Q |
95 |
tgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaa |
194 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| || ||| | || | ||||||||| | |||||| || ||||||||||| | ||||| || ||||| | |
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|
| T |
34622874 |
tgaatatttggcataacaccaccattagcaatagtaacatcaccaagaagcttgctcaattcttcatcgttcctcacagccaattgaatgtgtcttggca |
34622775 |
T |
|
| Q |
195 |
caattcgattcttcttgttg |
214 |
Q |
| |
|
|||||| ||||||||||| |
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|
| T |
34622774 |
caattcttgtcttcttgttg |
34622755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 420098 - 420203
Alignment:
| Q |
95 |
tgaatattgggcaaaacaccaccattagcaatggttacagctcccaaaagcttgctgagttcttcgtcattcctcacagcaagctgaatatgccttggaa |
194 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || ||| | || | ||||||||| | |||||| |||||||||||||| | ||||| || ||||| | |
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| T |
420098 |
tgaatattgggcataacaccaccattagcaatagtaacatcaccaagaagcttgctcaattcttcatcattcctcacagccaattgaatgtgtcttggca |
420197 |
T |
|
| Q |
195 |
caattc |
200 |
Q |
| |
|
|||||| |
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|
| T |
420198 |
caattc |
420203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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