View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19557_high_1_N (Length: 357)
Name: NF19557_high_1_N
Description: NF19557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19557_high_1_N |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 11780324 - 11780656
Alignment:
| Q |
8 |
gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11780324 |
gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaagatgttgacgacaa |
11780423 |
T |
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| Q |
108 |
tgatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatagggtccgga |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11780424 |
tgatgtcctgggcatagggaccgtcatatgagaagtaacaactgctgaagtagaattaacaaccgaccccatgtgtgagctagcaataatagggtccgga |
11780523 |
T |
|
| Q |
208 |
atagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtcc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
11780524 |
atagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggaactctctgagaagtggtgactgtcgaagtaatcggaaccggaacctaagtcc |
11780623 |
T |
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| Q |
308 |
aagtacttccattggccgaagtggaagcccccc |
340 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11780624 |
aagtacttccattggccgaagtggaagcccccc |
11780656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 17158744 - 17159082
Alignment:
| Q |
9 |
ggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaat |
108 |
Q |
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| T |
17158744 |
ggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaat |
17158843 |
T |
|
| Q |
109 |
gatgtcctaggcatagggaccgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatagggtccggaa |
208 |
Q |
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|| ||| | ||||||||||| |||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| || || |||||| |
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| T |
17158844 |
gacgtcttgggcatagggactgtcaactgagaagtaacaactgctgaagtagaagtaacaaccggccccatgtgtgagctagcaatagtacggaccggaa |
17158943 |
T |
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| Q |
209 |
tagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtcca |
308 |
Q |
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|||||||||||| | |||| ||||||||||||| |||||||||| || |||||||| ||||| ||| ||| ||||||||||||||||||||||||||| | |
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| T |
17158944 |
tagcctgagaagacagagccagtgttgaaggggtagtagtaaccagaactctctgaaaagtggtgactgttgaagtaatcggaaccggaacccaagtcga |
17159043 |
T |
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| Q |
309 |
agtacttccattggccgaagtggaagccccccatctgtg |
347 |
Q |
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||||| ||||||||| |||| |||||||||||| |||| |
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| T |
17159044 |
ggtactgccattggccaaagttgaagccccccatatgtg |
17159082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 12101867 - 12101531
Alignment:
| Q |
8 |
gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
107 |
Q |
| |
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|||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12101867 |
gggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaagatgttgacgacaa |
12101768 |
T |
|
| Q |
108 |
tgatgtcctaggcatagggac-----cgtcatatgagaagtaacaactgatgatgtagaattaacaaccggccccatgtgtgagctagcaataatagggt |
202 |
Q |
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||| ||| ||||||||| || | |||| || |||||| |||||| ||| ||||| | |||||||| ||||||| |||||| || ||||| |
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| T |
12101767 |
tgacgtcataggcatagtgattccttcatcatctgtgaagtatcaactgttgaagtagagtgaacaaccgaccccatgggtgagcaag------tagggg |
12101674 |
T |
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| Q |
203 |
ccggaatagcctgagaaggcggagctagtgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaaccca |
302 |
Q |
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||||||||||| |||||||| |||| |||||||||||||||| ||| ||| || ||||||||| |||| ||| | ||||||||||| ||| ||||||||| |
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| T |
12101673 |
ccggaatagccagagaaggctgagccagtgttgaaggggcagaagtgaccagaactctctgagtagtggtgactatcgaagtaatcagaatcggaaccca |
12101574 |
T |
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| Q |
303 |
agtccaagtacttccattggccgaagtggaagcc-ccccatct |
344 |
Q |
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|||||| ||||| |||||||| |||||||||||| |||||||| |
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| T |
12101573 |
agtccaggtactgccattggctgaagtggaagcctccccatct |
12101531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 340
Target Start/End: Complemental strand, 14977410 - 14977301
Alignment:
| Q |
231 |
tgttgaaggggcagtagtaaccggagctctctgagaagtgctgattgtcgaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtg |
330 |
Q |
| |
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||||| || ||||| |||||| ||| |||||||||| || | |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |
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| T |
14977410 |
tgttgcagaggcagaagtaactggaactctctgagaggtagtaattgtcgaagtaatcggaaccggaacccaagtacaagtactgccattggctgaagtg |
14977311 |
T |
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| Q |
331 |
gaagcccccc |
340 |
Q |
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||||| |||| |
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| T |
14977310 |
gaagctcccc |
14977301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 14977595 - 14977470
Alignment:
| Q |
19 |
tcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaatgatgtcctag |
118 |
Q |
| |
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|||| |||||| |||||| | ||| || |||||||||||| | ||||||| ||| || | ||| ||||| ||||||||||| ||||| || ||||| | |
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| T |
14977595 |
tcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgttgatgacaaagacgtcctgg |
14977496 |
T |
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| Q |
119 |
gcatagggaccgtcatatgagaagta |
144 |
Q |
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||| ||||||| |||| ||||||||| |
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| T |
14977495 |
gcacagggaccatcatctgagaagta |
14977470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 11776668 - 11776713
Alignment:
| Q |
290 |
gaaccggaacccaagtccaagtacttccattggccgaagtggaagc |
335 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
11776668 |
gaaccggaacccacgtccaagcgcttccattggccgaaatggaagc |
11776713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 140467 - 140525
Alignment:
| Q |
280 |
gaagtaatcggaaccggaacccaagtccaagtacttccattggccgaagtggaagcccc |
338 |
Q |
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| T |
140467 |
gaagtaataggaaccgggaaccaagtccaagtacctccattggccgaagttgaagcccc |
140525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 19069624 - 19069709
Alignment:
| Q |
22 |
aacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
107 |
Q |
| |
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|||||||||||||| || ||||||||| | |||||| ||||||||| | || || | ||||||||||||||| |||||||||| |
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| T |
19069624 |
aacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa |
19069709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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