View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19557_high_3 (Length: 336)
Name: NF19557_high_3
Description: NF19557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19557_high_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 33827961 - 33828285
Alignment:
| Q |
12 |
ataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgcacagcttccactgtaatgatgataatgc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33827961 |
ataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatgatgataatgc |
33828060 |
T |
|
| Q |
112 |
gtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatcatccggtaatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33828061 |
gtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatcatccggtaatg |
33828160 |
T |
|
| Q |
212 |
gctgaaaagttattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaaagaaattaaa |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33828161 |
gctgaaaaattattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaaagaaattaaa |
33828260 |
T |
|
| Q |
312 |
aacttatgtatatcttaacgaaaaa |
336 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
33828261 |
aacttatgtatgtcttaacgaaaaa |
33828285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University