View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19557_high_6 (Length: 315)

Name: NF19557_high_6
Description: NF19557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19557_high_6
NF19557_high_6
[»] chr3 (2 HSPs)
chr3 (2-307)||(5382661-5382966)
chr3 (69-307)||(13722434-13722671)
[»] chr1 (8 HSPs)
chr1 (2-307)||(42375802-42376107)
chr1 (93-307)||(23200945-23201159)
chr1 (109-307)||(14476202-14476401)
chr1 (211-307)||(2796448-2796544)
chr1 (2-112)||(23200824-23200934)
chr1 (2-120)||(14476419-14476537)
chr1 (1-52)||(2796598-2796649)
chr1 (69-131)||(2796537-2796599)
[»] scaffold0015 (1 HSPs)
scaffold0015 (2-307)||(28859-29156)
[»] chr8 (2 HSPs)
chr8 (2-307)||(86933-87230)
chr8 (267-307)||(19803151-19803191)
[»] chr6 (2 HSPs)
chr6 (93-307)||(16777097-16777310)
chr6 (2-121)||(16777312-16777431)
[»] chr7 (4 HSPs)
chr7 (91-307)||(11711870-11712084)
chr7 (1-120)||(11711750-11711869)
chr7 (93-297)||(13161142-13161344)
chr7 (3-120)||(13161023-13161140)
[»] chr4 (2 HSPs)
chr4 (76-192)||(14024112-14024229)
chr4 (1-52)||(14024063-14024114)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 5382966 - 5382661
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | |||||||||||    
T  5382966 ctgacctgtccaatcatcgacaagtcagcctccacacccctgccacgtgtcacctagtgccacgtcatcacccagtcatccaaaattttcagaaattaca 5382867  T
Q  102 aatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatttgcccctat 201  Q
    ||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  5382866 aattttccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcagaattatccctgtactttttgaaattgcaaatttgcccctat 5382767  T
Q  202 tctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgctc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  5382766 tctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattacaatagacaattcctattatgctc 5382667  T
Q  302 tgtggt 307  Q
    ||||||    
T  5382666 tgtggt 5382661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 69 - 307
Target Start/End: Complemental strand, 13722671 - 13722434
Alignment:
Q  69 tcacccagtcaaccaaaatatccagaaattacaaatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattaccc 168  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  13722671 tcacccagtcacccaaaattttcagaaattacaaatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcataattaccc 13722572  T
Q  169 ctgtactttttgaaattgtaaatttgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttccttttta 268  Q
     ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13722571 ttgtactttttgaaattgcaaatttgccc-tattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttccttttta 13722473  T
Q  269 gtgctattatagtagacaattcctattatgctctgtggt 307  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  13722472 gtgctattataatagacaattcctattatgctctgtggt 13722434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 307
Target Start/End: Original strand, 42375802 - 42376107
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || | ||||||| | || ||||||||    
T  42375802 ctgacctgttcagtcatcgacaagtcagcctccacatccctgccacgtgtcacctagtgccacgtcatcacccggttacccaaaattttcaaaaattaca 42375901  T
Q  102 aatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatttgcccctat 201  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42375902 aatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgcaaatttgcccctat 42376001  T
Q  202 tctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgctc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  42376002 tctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattataatagacaattcctattatgctt 42376101  T
Q  302 tgtggt 307  Q
    ||||||    
T  42376102 tgtggt 42376107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 93 - 307
Target Start/End: Original strand, 23200945 - 23201159
Alignment:
Q  93 gaaattacaaatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatt 192  Q
    |||||| || ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  23200945 gaaatttcagatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatt 23201044  T
Q  193 tgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  23201045 tgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatctttcctttttagtgttattataatagacaattcct 23201144  T
Q  293 attatgctctgtggt 307  Q
    |||||||| ||||||    
T  23201145 attatgctatgtggt 23201159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 109 - 307
Target Start/End: Complemental strand, 14476401 - 14476202
Alignment:
Q  109 cccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataat-tacccctgtactttttgaaattgtaaatttgcccctattctttc 207  Q
    ||||| ||||| |||| |||||||||||||||| ||||||||||||||||  ||  ||||||||||||||||||||||| |||||| |||||||||||||    
T  14476401 cccaaaactttctgaaattagaaaattgcccctaaactttcaaaaattgcggaaaatacccctgtactttttgaaattgcaaattttcccctattctttc 14476302  T
Q  208 tggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgctctgtggt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  14476301 tggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctatcataatagacaattcctattatgctctatggt 14476202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 2796544 - 2796448
Alignment:
Q  211 aattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgctctgtggt 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2796544 aattagaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattataatagacaattcctattatgctctgtggt 2796448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 23200824 - 23200934
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||||| ||||||| | |||||||||||    
T  23200824 ctgacctgtccagtcatcgacaagtcagcctccacatccctgccacatgtcacctagttccacgtcataacccagtcacccaaaattttcagaaattaca 23200923  T
Q  102 aatttgcccca 112  Q
    |||||||||||    
T  23200924 aatttgcccca 23200934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 14476537 - 14476419
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||| |  ||||||||||||||||||||||| |||| || | |||||||| ||    
T  14476537 ctgacctgtccagtcatcgacaagtcagcccccacatccctgccacgtgtcactcagtgccacgtcatcacccagtcacccaacattttcagaaattgca 14476438  T
Q  102 aatttgccccaagactttt 120  Q
    |||||||||||| ||||||    
T  14476437 aatttgccccaaaactttt 14476419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2796649 - 2796598
Alignment:
Q  1 cctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtc 52  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  2796649 cctgacctgtctagtaatcgacaagtcagcctccacatccctgccacgtgtc 2796598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 2796599 - 2796537
Alignment:
Q  69 tcacccagtcaaccaaaatatccagaaattacaaatttgccccaagactttttgaatttagaa 131  Q
    ||||||||||| ||||||| | || |||||||||||||| ||||| ||||| |||| ||||||    
T  2796599 tcacccagtcatccaaaattttcataaattacaaatttggcccaaaactttatgaaattagaa 2796537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 29156 - 28859
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||        |||| |||||||||||||    
T  29156 ctgacatgtccagtcatcgacacgtcagcctccacacccctgccacgtgtcacctagtgccacgtcatcaccca--------aaatttccagaaattaca 29065  T
Q  102 aatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatttgcccctat 201  Q
    ||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  29064 aatttaccccaaacctttttgaaattagaaaattgcccctcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatttgcccctat 28965  T
Q  202 tctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgctc 301  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  28964 tctttctgaaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtactattataatagacaattcctattatgctc 28865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 307
Target Start/End: Original strand, 86933 - 87230
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||        |||| |||||||||||||    
T  86933 ctgacatgtccagtcatcgacacgtcagcctccacacccctgccacgtgtcacctagtgccacgtcatcaccca--------aaatttccagaaattaca 87024  T
Q  102 aatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatttgcccctat 201  Q
    ||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  87025 aatttaccccaaacctttttgaaattagaaaattgcccctcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatttgcccctat 87124  T
Q  202 tctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgctc 301  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  87125 tctttctgaaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtactattataatagacaattcctattatgctc 87224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 19803151 - 19803191
Alignment:
Q  267 tagtgctattatagtagacaattcctattatgctctgtggt 307  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  19803151 tagtgctattataatagacaattcctattatgctctgtggt 19803191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 307
Target Start/End: Complemental strand, 16777310 - 16777097
Alignment:
Q  93 gaaattacaaatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatt 192  Q
    |||||| || ||||||||||| || || |||| |||||||||||||||||||||||||||||||||  |||||||| | ||||||||||||||| |||||    
T  16777310 gaaatttcagatttgccccaaaacattatgaaattagaaaattgcccctcaactttcaaaaattgcggaattaccc-tatactttttgaaattgcaaatt 16777212  T
Q  193 tgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcct 292  Q
    | ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16777211 ttcccctattctttctggatttacaatttttcccttgttcgaaaattgtgaattttcaggaaatccttcctttttagtgctattataatagacaattcct 16777112  T
Q  293 attatgctctgtggt 307  Q
    |||||||||||||||    
T  16777111 attatgctctgtggt 16777097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 16777431 - 16777312
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||||| |||||||||||||| | ||||| | ||||||| |||    
T  16777431 ctgacctgtccagtcatcgacaagtcagcctccacatccctgccacgtgtcactcagtgccacatcatcacccagtcacctaaaattttcagaaataaca 16777332  T
Q  102 aatttgccccaagacttttt 121  Q
    ||| |||||||  |||||||    
T  16777331 aatctgccccataacttttt 16777312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 91 - 307
Target Start/End: Original strand, 11711870 - 11712084
Alignment:
Q  91 cagaaattacaaatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaa-ttgcataattacccctgtactttttgaaattgtaa 189  Q
    |||||||| || ||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||| | |   |||| |||||| ||    
T  11711870 cagaaatttcatatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaaattgcagaattaccctttt---tttttaaattgcaa 11711966  T
Q  190 atttgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaatt 289  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11711967 atttgcccatattctttatggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattataatagacaatt 11712066  T
Q  290 cctattatgctctgtggt 307  Q
     |||||||||||||||||    
T  11712067 tctattatgctctgtggt 11712084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 11711750 - 11711869
Alignment:
Q  1 cctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattac 100  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||| ||||||| |||||||||| |    
T  11711750 cctgacatgtccagtcatcgacaagtcagcctccacatccctgccacgtgtcacccagtgccacgtcatgacccagtcacccaaaatttccagaaattgc 11711849  T
Q  101 aaatttgccccaagactttt 120  Q
    |||||| |||||| ||||||    
T  11711850 aaattttccccaaaactttt 11711869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 93 - 297
Target Start/End: Original strand, 13161142 - 13161344
Alignment:
Q  93 gaaattacaaatttgccccaagactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatt 192  Q
    ||||||||| |||||||| || |||||||||| ||| ||| |||||||||| ||||||||| ||||| | |||||||| || |||||||||||| |||||    
T  13161142 gaaattacatatttgcccaaa-actttttgaaattacaaagttgcccctcagctttcaaaatttgcagatttacccctatattttttgaaattgcaaatt 13161240  T
Q  193 tgcccctattctttctggaattacaattt-tacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcc 291  Q
    | ||| | ||||||||  ||||||| ||| |||||  |||  |||||||||| |||||| |||||| || | |||||||||||||||  |||| ||||||    
T  13161241 ttcccatgttctttctaaaattacattttataccccggtt-gaaaattgtgatttttcaagaaatcatttc-ttttagtgctattatcatagaaaattcc 13161338  T
Q  292 tattat 297  Q
    ||||||    
T  13161339 tattat 13161344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 13161023 - 13161140
Alignment:
Q  3 tgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtc-ccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    ||||| ||||||||||||||||||||||| ||||| ||  ||||| |||| ||| |||||| | |||||| |||||||   ||| | | || ||||||||    
T  13161023 tgaccagtccagtcatcgacaagtcagccaccacagccgcgccacatgtcacccaagtgcctcatcatcaaccagtcacttaaactct-caaaaattaca 13161121  T
Q  102 aatttgccccaagactttt 120  Q
    ||| |||||||| ||||||    
T  13161122 aatctgccccaaaactttt 13161140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 14024112 - 14024229
Alignment:
Q  76 gtcaaccaaaatatccagaaattacaaatttgccccaagacttttt-gaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtac 174  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||||| ||| ||  | | || ||||||||||||||||||||||| |||| |||||||||    
T  14024112 gtcacccaaaatttccagaaattacaaatttgccccaatactttttcgaaatttcagattttcccctcaactttcaaaaattgcagaattgcccctgtac 14024211  T
Q  175 tttttgaaattgtaaatt 192  Q
    |||||||||||| |||||    
T  14024212 tttttgaaattgcaaatt 14024229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14024063 - 14024114
Alignment:
Q  1 cctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtc 52  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14024063 cctgatctgtccagtcatcgacaagtcagcctccacatccctgccacgtgtc 14024114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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