View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19557_low_1 (Length: 342)
Name: NF19557_low_1
Description: NF19557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19557_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 24 - 330
Target Start/End: Complemental strand, 27747640 - 27747334
Alignment:
| Q |
24 |
caaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccnnnnnnnaaattttag |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
27747640 |
caaaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacattctcctttcccattttgtccttcctttttttaaattttag |
27747541 |
T |
|
| Q |
124 |
actatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccatatga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747540 |
actatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccatatga |
27747441 |
T |
|
| Q |
224 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatgaactcatttgctgctttaataacttgttgatcactatcatcat |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27747440 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatgaactcatttgctgcttcaataacttgttgatcactatcatcat |
27747341 |
T |
|
| Q |
324 |
ctgatga |
330 |
Q |
| |
|
||||||| |
|
|
| T |
27747340 |
ctgatga |
27747334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 38527379 - 38527452
Alignment:
| Q |
126 |
tatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttg |
199 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
38527379 |
tatatcccttgagaccagtacctgtccccttgtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 49518280 - 49518111
Alignment:
| Q |
13 |
aagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccnnnnn |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49518280 |
aagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataacattctccttccccattttgtccttccttttt |
49518181 |
T |
|
| Q |
113 |
nnaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagct |
182 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| || |||||||||||| |||||||| ||||||| |
|
|
| T |
49518180 |
ttaaattttagattatatcccttgagaccagtttctatccccttgtcatcaggaagcaatagttcaagct |
49518111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 330
Target Start/End: Complemental strand, 49518065 - 49517956
Alignment:
| Q |
224 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaat---gaactcatttgctgctttaataacttgttgatcactatcat |
320 |
Q |
| |
|
|||||| |||||||| ||| || ||||||||||||||||||| |||||||||||| |||||||| |||| ||| | || |||||||||||||||||| |
|
|
| T |
49518065 |
ttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcat |
49517966 |
T |
|
| Q |
321 |
catctgatga |
330 |
Q |
| |
|
|||||||||| |
|
|
| T |
49517965 |
catctgatga |
49517956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University