View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19558_high_2 (Length: 503)
Name: NF19558_high_2
Description: NF19558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19558_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 22 - 500
Target Start/End: Original strand, 24238695 - 24239172
Alignment:
| Q |
22 |
gcgtgtctgtatccgtacttcatagttttgcccaatataaataaaaactggagaacaagagnnnnnnn--gaaactcacctaaaatggtaagaaccaaga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24238695 |
gcgtgtctgtatccgtacttcatagttttgcccaatataaataaaaactggagaacaagaagaaaaaaaagaaactcacctaaaatggtaagaaccaaga |
24238794 |
T |
|
| Q |
120 |
ccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgactttgtccattaaaccattccccag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24238795 |
ccatgtttagaaccaaacttaaattcaccaacataacaactcccatcagaacaagattgaacaccaaaaccatgactctgtccattaaaccattccccag |
24238894 |
T |
|
| Q |
220 |
aataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagctttcaat |
319 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24238895 |
aataacaatcaccagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagctttcaat |
24238994 |
T |
|
| Q |
320 |
tccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccacttccattacactttccaccgtgaaat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24238995 |
tccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccacttccattacactttccaccgtgaaat |
24239094 |
T |
|
| Q |
420 |
tctccttcgtagaaatcaccattgctgtaaaattcaacttcaacgccttcttttaataacaaccctttcccgttcatttca |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||| |
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| T |
24239095 |
tctccttcgtagaaatcaccattgctgtaaaattcaacttcaacaccttcttt---taacaaccctttcacgttcttttca |
24239172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 97 - 451
Target Start/End: Original strand, 32693506 - 32693860
Alignment:
| Q |
97 |
acctaaaatggtaagaaccaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgact |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||||| ||||||||| ||| |||||||||||| ||||| ||| | ||||||||| |
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| T |
32693506 |
acctaaaatggtaacaaccaagaccatgtttaacaccatgtttaaacatcccaacataagtactagcatcagaacaagtttgaagacccataccatgact |
32693605 |
T |
|
| Q |
197 |
ttgtccattaaaccattccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatcta |
296 |
Q |
| |
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||| |||||| ||||||| |||||| || |||||| |||||| || ||||||||||||||||||||||||| |||| | |||| ||||||||||||| |
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| T |
32693606 |
ttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcattccttttctatactgacccttatatcta |
32693705 |
T |
|
| Q |
297 |
cttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccacttc |
396 |
Q |
| |
|
|| || |||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||| ||| || ||||||| |
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|
| T |
32693706 |
ctccctctagcccaactctcaattccatatccatcatatcttccatcaacccaatcaccttcatatcttccattcacaaagtaattatacacaccacttc |
32693805 |
T |
|
| Q |
397 |
cattacactttccaccgtgaaattctccttcgtagaaatcaccattgctgtaaaa |
451 |
Q |
| |
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| |||| |||| ||||| || |||||||| |||||||| ||||||||||| |
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|
| T |
32693806 |
cgttacttcttcctttatgaaactccccttcgtaaaaatcaccgttgctgtaaaa |
32693860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 114 - 394
Target Start/End: Original strand, 1586805 - 1587085
Alignment:
| Q |
114 |
ccaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgactttgtccattaaaccatt |
213 |
Q |
| |
|
||||||||||||||| ||| ||||||| || |||||| | | ||| |||||| ||||| ||||||||| ||||||||| |||||||| ||||||| |
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|
| T |
1586805 |
ccaagaccatgtttaacaccccacttaaactctccaacaaatctactcccatcatcacaagtatgaacaccactaccatgactctgtccattcaaccatt |
1586904 |
T |
|
| Q |
214 |
ccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgtttataacaacccttatatctacttcccctagcccagct |
313 |
Q |
| |
|
| |||| |||| ||| | |||||||||||||||||||||| | |||| |||||| || | | |||| ||||||||| ||||||||| || ||| || |
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|
| T |
1586905 |
caccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatccatctctatacatacccttatacctacttcccttactccaact |
1587004 |
T |
|
| Q |
314 |
ttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccact |
394 |
Q |
| |
|
|||| ||| |||| |||||||| || |||||||||| ||||||||||||||||||| || ||| | |||||| ||||| |
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|
| T |
1587005 |
ctcaacaccaaaaccttcatatttcccgtcaacccaattcccttcatatcttccactcatattatagtaataaaccccact |
1587085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 41090290 - 41090390
Alignment:
| Q |
294 |
ctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacataataatgataaactccac |
393 |
Q |
| |
|
|||||||| |||||||| |||||| ||| |||||||||| |||||||||| ||||||||||||| |||||||||||| || | |||||||||| |||| |
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|
| T |
41090290 |
ctacttcctctagcccacgtttcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccac |
41090389 |
T |
|
| Q |
394 |
t |
394 |
Q |
| |
|
| |
|
|
| T |
41090390 |
t |
41090390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 275
Target Start/End: Original strand, 17303535 - 17303697
Alignment:
| Q |
113 |
accaagaccatgtttagaaccaaacttaaattcaccaacataacaacttccatcagaacaagattgaacaccaaaaccatgactttgtccattaaaccat |
212 |
Q |
| |
|
|||||| ||||||||| ||| | |||||||| |||||||| | ||| ||||| ||||| |||||||| | |||||||| ||||||||| ||||| |
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| T |
17303535 |
accaaggccatgtttaacaccccatttaaattctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccat |
17303634 |
T |
|
| Q |
213 |
tccccagaataacaatcactagtataaaatctataaacaccataaccatgtctcaaaccttgt |
275 |
Q |
| |
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|| |||| |||| ||| | ||||||||| |||||||||||| | ||||||||||| |||||| |
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|
| T |
17303635 |
tctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgt |
17303697 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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