View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19558_high_3 (Length: 416)
Name: NF19558_high_3
Description: NF19558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19558_high_3 |
 | |
|
| [»] scaffold1903 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1903 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold1903
Description:
Target: scaffold1903; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 50 - 408
Target Start/End: Complemental strand, 731 - 378
Alignment:
| Q |
50 |
gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca |
149 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
731 |
gtatccatggatgcacaagcagatttatcaagctactatgccacctccaacaaattcatcaaat----gggtcactcactgataactctttttcattcca |
636 |
T |
|
| Q |
150 |
tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa |
249 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
635 |
tttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaacca-ataaaaatgttcatgttaatctcataaaacaagaacaagatgaa |
537 |
T |
|
| Q |
250 |
gttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaacacaaaggaatt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
536 |
gttgttgatggtgatggtgaagaagaagattaaacaattgatttcatgggtaggcatatttgtttcaagaggagattagaggaagaaacacaaaggaatt |
437 |
T |
|
| Q |
350 |
gagaaggaattgaattgaatgcttctgaaaattttgtttgtattgttgtgacctatgat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
436 |
gagaaggaattgaattgaatgcttctgaaaattttgtttgtattgttgtgacctgtgat |
378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 50 - 408
Target Start/End: Original strand, 3614926 - 3615280
Alignment:
| Q |
50 |
gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca |
149 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| | ||| |||||| |||||| ||||||||||| |
|
|
| T |
3614926 |
gtatccatggatgcacaagcagatttatcaaactactatgccatctccaacaaattcatcaaatga----gtcactcactggtaactccttttcattcca |
3615021 |
T |
|
| Q |
150 |
tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa |
249 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3615022 |
tttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa |
3615121 |
T |
|
| Q |
250 |
gttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaacacaaaggaatt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
3615122 |
gttgttgatggtgatggtgaagaagaaggttaaacaattgattttatgggtaggcctatttgtttcaagaggagatcagaggaagaaacacaaaggattt |
3615221 |
T |
|
| Q |
350 |
gagaaggaattgaattgaatgcttctgaaaattttgtttgtattgttgtgacctatgat |
408 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3615222 |
gagaaggaattgagttgaatgcttctgaaaattttgtttgtattgttgtgacctatgat |
3615280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 408
Target Start/End: Complemental strand, 5568890 - 5568504
Alignment:
| Q |
7 |
taatttttgttgttgcttctgaaaaaaataannnnnnnnnnnngtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| || |||||||||| || |
|
|
| T |
5568890 |
taatttttgttgttgcttctgaaaaaaatcattctttttttttgtatccatggatgcacaagcagatttatcaagctactatgccatctccaacaaactc |
5568791 |
T |
|
| Q |
107 |
atcaaattaatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactaga |
206 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5568790 |
atcaaat----gggtcactcactaataactctttttcattccatttgaattcaaaatcaaacccttctctttcatggcatttactttatgaaaaactaga |
5568695 |
T |
|
| Q |
207 |
taaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5568694 |
taaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtaggcct |
5568595 |
T |
|
| Q |
307 |
atttgtttcaagaggagattagaggaagaaacacaaaggaattgagaaggaattgaattgaatgcttctgaaaattttgtttgtattgttgtgacctatg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5568594 |
atttgtttcaagaggagattagaggaagaaacacaaaggaa-----------ttgaattgaatgcttctgaaaattttgtttgtattgttgtgacctgtg |
5568506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 50 - 351
Target Start/End: Complemental strand, 35611619 - 35611325
Alignment:
| Q |
50 |
gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca |
149 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
35611619 |
gtatccatggatgcacaagcagatttatcaagctactatgccatctccaacaaattcatcaaat----gggtcattcactgataactctttttcattcca |
35611524 |
T |
|
| Q |
150 |
tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa |
249 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35611523 |
tttgaattcaaaatcaaactcttctctttcatggcatttacttcatgaaaaaccagataaaaatgttcatgttaatctcataaaacaagaacaggatgaa |
35611424 |
T |
|
| Q |
250 |
gttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaacacaaaggaatt |
349 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35611423 |
gttgttgatggtgatggtgaa---gaaggttaaacaattgatttcatgggtaaacttatttgtttcatgaggagattagaggaagaaacacaaaggaatt |
35611327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 50 - 408
Target Start/End: Complemental strand, 9981627 - 9981284
Alignment:
| Q |
50 |
gtatccatggatgtacaagcagatttatcaagctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattcca |
149 |
Q |
| |
|
|||| |||||||| ||||||| |||||||||||||||||| || || ||||||||||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
9981627 |
gtattcatggatgcacaagcacatttatcaagctactatgccatcttcaacaaattcatcaaat----gggtcactcaccgataactctttttcattcca |
9981532 |
T |
|
| Q |
150 |
tttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa |
249 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
9981531 |
tttgaattcaaaatcaaacccttctctttcatggcatttacttcatgaaaaatcacataaaaatgttcatgttaatctcataaaataagaacaggatgaa |
9981432 |
T |
|
| Q |
250 |
gttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaacacaaaggaatt |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9981431 |
gttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtaggcctatttgtttcaagaggagattagaggaagaaacacaaaggaa-- |
9981334 |
T |
|
| Q |
350 |
gagaaggaattgaattgaatgcttctgaaaattttgtttgtattgttgtgacctatgat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9981333 |
---------ttgaattgaatgcttctgaaaattttgtttgtattgttgtgacctgtgat |
9981284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 164 - 339
Target Start/End: Original strand, 46355866 - 46356035
Alignment:
| Q |
164 |
caaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtg |
262 |
Q |
| |
|
|||| |||||||||| ||||| ||| |||||| ||||| |||||||||| ||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
46355866 |
caaatctttctcttttatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcgtaaaacaagaataagattaaagttgttgat---- |
46355960 |
T |
|
| Q |
263 |
atggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaaca |
339 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
46355961 |
--ggtgaagaagatggttaaacaattgattttatgggtaggcctttttgtttcacgaggagattagaggaagaaaca |
46356035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 341
Target Start/End: Original strand, 20855476 - 20855635
Alignment:
| Q |
176 |
tttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtgatggtgaagaag |
274 |
Q |
| |
|
||||||||| ||| |||||| ||||| |||||||||| |||||||||||||||||||||| || ||||| || ||||||||| |||||||||| |
|
|
| T |
20855476 |
tttcatggcgttt-cttcattaaaaatcagataaaaataatcatgttaatctcataaaacaaaaataagattaaagttgttgat------ggtgaagaag |
20855568 |
T |
|
| Q |
275 |
aaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaacaca |
341 |
Q |
| |
|
| ||||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
20855569 |
atggttaaacaattgatttcatgtgtaggcctttttgtttcacgaggagattagaggaagaaacaca |
20855635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 392
Target Start/End: Original strand, 20855635 - 20855673
Alignment:
| Q |
354 |
aggaattgaattgaatgcttctgaaaattttgtttgtat |
392 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
20855635 |
aggaattgaattgattgtttctgaaaattttgtttgtat |
20855673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 81 - 342
Target Start/End: Original strand, 33130182 - 33130445
Alignment:
| Q |
81 |
gctactatgtcacctccaacaaattcatcaaattaatgggtcgttcactgataactctttttcattccatttgaattcaaaatcaaacctttctctttca |
180 |
Q |
| |
|
||||| ||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
33130182 |
gctaccatgccatctccaacaaattcatcaaat----gggtcactcactgataactctttttcattccatttgaattcaaaaccaaacccttctctttcc |
33130277 |
T |
|
| Q |
181 |
tggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaac------aagatgaagttgttgatggtgatggtgaagaag |
274 |
Q |
| |
|
|||| ||||||||||||||||| ||| || ||||||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
33130278 |
tggcgtttacttcatgaaaaaccagacaacaatgttcatcttaatctcatcaaacaagaacaggaacaagatgaagttgttgatggtgttggtgaagaag |
33130377 |
T |
|
| Q |
275 |
aaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaacacaa |
342 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33130378 |
aaggtgaaacaattgattttatgggtagacctatttgtttcaagaggagattagaggaagaaacacaa |
33130445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 171 - 351
Target Start/End: Complemental strand, 54670966 - 54670797
Alignment:
| Q |
171 |
ttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaagttgttgatggtgatggtgaa |
270 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||| | || |||||| |||| |
|
|
| T |
54670966 |
ttctctttcatggtgtttacttcattaaaaaccagataaaaatagtcatgttaatctcataaaacaagaataagtttaaa--gttgattgtga------- |
54670876 |
T |
|
| Q |
271 |
gaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaacacaaaggaattga |
351 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54670875 |
--agaaagttaaacaattgatttcatgggtagggctttttgtttcacgaggagattagaggaagaaacacaaaggaattga |
54670797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 128 - 342
Target Start/End: Complemental strand, 15480551 - 15480331
Alignment:
| Q |
128 |
ctgataactctttttcattccatttgaattcaaaatcaaacctttctctttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatct |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||| ||||||||||||||||| ||| || ||||||||||||||| | |
|
|
| T |
15480551 |
ctgataactctttttcattccatttgaattcaaaaccaaacccttctatttaatggtgtttacttcatgaaaaaccagacaacaatgttcatgttaatgt |
15480452 |
T |
|
| Q |
228 |
ca------taaaacaagaacaagatgaagttgttgatggtgatggtgaagaagaaggttaaacaattgatttcatgggtagacctatttgtttcaagagg |
321 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15480451 |
taatatcttaaaacaagaacaagatgaagttgttgatggtgatggtgaagaggaaggtgaaacaattgatttcttgggtagacctatttgtttcaagagg |
15480352 |
T |
|
| Q |
322 |
agattagaggaagaaacacaa |
342 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
15480351 |
agattggaggaagaaacacaa |
15480331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 14735280 - 14735449
Alignment:
| Q |
176 |
tttcatggcatttacttcatgaaaaactagataaaaatgttcatgttaatctcataaaacaagaacaagatgaa-gttgttgatggtgatggtgaagaag |
274 |
Q |
| |
|
||||||||| ||| |||||| ||||| |||||||||| ||||||||||||||||||||| |||| ||||| || |||||||||| ||| ||||| |
|
|
| T |
14735280 |
tttcatggcgttt-cttcattaaaaatcagataaaaatattcatgttaatctcataaaaccagaataagattaaagttgttgatgatga------agaag |
14735372 |
T |
|
| Q |
275 |
aaggttaaacaattgatttcatgggtagacctatttgtttcaagaggagattagaggaagaaacacaaaggaattga |
351 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14735373 |
atggttaaacaattgatttcatgggtaggcctttttgtttcacgaggagattagaggaagaaacacaaaggaattga |
14735449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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