View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19558_high_4 (Length: 377)
Name: NF19558_high_4
Description: NF19558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19558_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 14723104 - 14722762
Alignment:
| Q |
10 |
attattctcaggtaacacgagagtatgctagaatctagagattaagatggtccaagtcagtagtcacatggcttcatatgcattgcaaattacaaactcc |
109 |
Q |
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| T |
14723104 |
attatgctcaggtaacacgagagtatgctagaatctagagattaagatggtccaagtca-------catggcttcatatgcattgcaaattacaaactcc |
14723012 |
T |
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| Q |
110 |
agagatgcagatggatcgtgtggttctggttttggaggatgagcgatagcagcatttggatgcgtagcaaggaagagcttaatgatattaattattaagg |
209 |
Q |
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| T |
14723011 |
agagatgcagatggatcgtgtggttccggttttggaggatgagcgatagcagcatttggatgcgtagcaaggaagagcttagtgatattaattattaagg |
14722912 |
T |
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| Q |
210 |
atgcagttgaataatcatagcaaagtaacgaataaaaggaaaaggttgataatataccaattccagaacttagggagtagaatccaaagaataatcaatc |
309 |
Q |
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| T |
14722911 |
atgcagttgaataaacatagcaaagtaacgaataaaaggaaaaggttgataatataccaattccagaacttagggagtagaatccaaagaataatcaatc |
14722812 |
T |
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| Q |
310 |
tcacatccaacatcaccagaaaagtggaatacgattctagtagttgggaa |
359 |
Q |
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| T |
14722811 |
tcacatccaacatcaccagaaaagtggaatacgattctagtagttgggaa |
14722762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 356
Target Start/End: Original strand, 24634208 - 24634358
Alignment:
| Q |
202 |
tattaaggatgcagttgaataatcatagcaaagtaacgaataaaaggaaaaggttgataatataccaattccagaacttagggagtagaatccaaagaat |
301 |
Q |
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| T |
24634208 |
tattaaggatgcagttgaagaaacataatgaaataaccattaaaaggaatagattgatgatataccaattccagaacttagggagtagaatccaaagaa- |
24634306 |
T |
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| Q |
302 |
aatcaatctcacatccaacatcaccagaaaagtggaatacgattctagtagttgg |
356 |
Q |
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| T |
24634307 |
---gtgtctcacatccaataacaccagaaaagtggaatatgatcatagtagttgg |
24634358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 24679885 - 24679977
Alignment:
| Q |
208 |
ggatgcagttgaataatcatagcaaagtaacgaataaaaggaaaaggttgataatataccaattccagaacttagggagtagaatccaaagaa |
300 |
Q |
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| T |
24679885 |
ggatgcagttgaagaaacataaagaagtaaccattaaaaggaataagttgataatataccaattccagaattcagggagtagaatccaaagaa |
24679977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 24656352 - 24656410
Alignment:
| Q |
242 |
taaaaggaaaaggttgataatataccaattccagaacttagggagtagaatccaaagaa |
300 |
Q |
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| T |
24656352 |
taaaaggaataagttgatgatataccaattccagaaatcagggagcagaatccaaagaa |
24656410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 24676864 - 24676917
Alignment:
| Q |
242 |
taaaaggaaaaggttgataatataccaattccagaacttagggagtagaatcca |
295 |
Q |
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| T |
24676864 |
taaaagggatagattgatgatataccaattccagaagtcagggagtagaatcca |
24676917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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