View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19558_low_1 (Length: 571)
Name: NF19558_low_1
Description: NF19558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19558_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 407 - 499
Target Start/End: Original strand, 40424754 - 40424846
Alignment:
| Q |
407 |
ctgttgatgtttcttaccggaacaatagtcttcatcaaataattatattttagtcatcatttgaatgcttcataaagtttacatcaaaaatct |
499 |
Q |
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| T |
40424754 |
ctgttgatgtttcttaccggaacaatagtcttcatcaaataattatattttagtcatcatttgaatgcttcataaagtttacatcaaaaatct |
40424846 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 556
Target Start/End: Original strand, 40424860 - 40424894
Alignment:
| Q |
522 |
accgaaaacaaaggttcatgtaatgtcatgcaact |
556 |
Q |
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| T |
40424860 |
accgaaaacaaaggttcatgtaatgtcgtgcaact |
40424894 |
T |
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