View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19558_low_13 (Length: 202)

Name: NF19558_low_13
Description: NF19558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19558_low_13
NF19558_low_13
[»] chr7 (7 HSPs)
chr7 (9-112)||(32979202-32979304)
chr7 (22-112)||(36582842-36582931)
chr7 (13-112)||(10365744-10365842)
chr7 (29-80)||(24718025-24718076)
chr7 (13-80)||(31039004-31039071)
chr7 (33-112)||(34293586-34293665)
chr7 (22-81)||(43047734-43047793)
[»] chr2 (5 HSPs)
chr2 (29-105)||(27888773-27888849)
chr2 (33-91)||(1533284-1533341)
chr2 (13-78)||(14950818-14950883)
chr2 (13-80)||(9910627-9910694)
chr2 (39-80)||(28164895-28164936)
[»] chr1 (5 HSPs)
chr1 (13-112)||(8039193-8039291)
chr1 (9-112)||(27786790-27786891)
chr1 (22-80)||(15495882-15495940)
chr1 (22-80)||(2077464-2077522)
chr1 (13-73)||(11814696-11814756)
[»] chr6 (3 HSPs)
chr6 (13-105)||(11366696-11366787)
chr6 (13-112)||(9566800-9566898)
chr6 (13-78)||(32747699-32747764)
[»] chr5 (6 HSPs)
chr5 (13-87)||(40599965-40600039)
chr5 (13-80)||(24867186-24867253)
chr5 (29-80)||(42268882-42268933)
chr5 (13-79)||(27170263-27170329)
chr5 (13-80)||(26331198-26331265)
chr5 (22-70)||(40680879-40680927)
[»] chr8 (6 HSPs)
chr8 (39-112)||(10182063-10182136)
chr8 (33-112)||(38499212-38499290)
chr8 (34-80)||(23635876-23635922)
chr8 (29-80)||(5515301-5515352)
chr8 (34-70)||(23635828-23635864)
chr8 (13-80)||(15050143-15050210)
[»] chr3 (3 HSPs)
chr3 (13-80)||(31699222-31699289)
chr3 (29-112)||(46742976-46743058)
chr3 (39-105)||(11387447-11387513)
[»] scaffold0005 (1 HSPs)
scaffold0005 (41-112)||(269936-270008)
[»] scaffold0088 (1 HSPs)
scaffold0088 (32-112)||(26994-27076)
[»] scaffold0725 (1 HSPs)
scaffold0725 (32-112)||(1078-1160)
[»] chr4 (3 HSPs)
chr4 (43-80)||(12130548-12130585)
chr4 (13-70)||(45873106-45873163)
chr4 (22-78)||(55728705-55728761)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 32979202 - 32979304
Alignment:
Q  9 accaaaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctccca 108  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32979202 accaaaaacgacaaa-aactaccaaaaaacccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctccca 32979300  T
Q  109 tcag 112  Q
    ||||    
T  32979301 tcag 32979304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 36582842 - 36582931
Alignment:
Q  22 attaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    |||||| ||||||||| |||||| |||||||||||||||| || |||| ||| || ||||||||||||||| | |||||||||||||||||    
T  36582842 attaaccaccaaaaaa-ccaccagtaatcctcaccaaaaaccaacacccgccacctcgaaaaccaataaacccaactgaccctcccatcag 36582931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 10365744 - 10365842
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    ||||| || |||||| ||||||||| |  ||| |||||||||||||||| ||||| ||||| |||||||||||||||||| ||| |||||||| ||||||    
T  10365744 aaaactaccattaaccaccaaaaaa-cttccagtaatcctcaccaaaaaccagcatcagccaccacgaaaaccaataaaccccattgaccctctcatcag 10365842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 24718025 - 24718076
Alignment:
Q  29 accaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  24718025 accacaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacga 24718076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 31039004 - 31039071
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    ||||| || |||||| |||| |||| ||||||||| |||||||| |||||||||||||||| ||||||    
T  31039004 aaaactaccattaaccaccacaaaaaccaccattactcctcaccgaaaatcagcaccagccaccacga 31039071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 34293665 - 34293586
Alignment:
Q  33 aaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    ||||| |||||  |||||| ||||||||| || |||| ||| || |||||||| |||||| |||||||||||||||||||    
T  34293665 aaaaaaccacccgtaatccccaccaaaaaccaacacccgccacctcgaaaaccgataaaccccactgaccctcccatcag 34293586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 43047793 - 43047734
Alignment:
Q  22 attaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaa 81  Q
    |||||| |||| |||| ||||||||||||||||| |||||||||||||| || |||||||    
T  43047793 attaaccaccacaaaaaccaccattaatcctcacaaaaaatcagcaccaaccaccacgaa 43047734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 27888773 - 27888849
Alignment:
Q  29 accaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctc 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||  |||||||||||    
T  27888773 accaaaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacgaaaatcaataaacctcactgaccctc 27888849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 1533284 - 1533341
Alignment:
Q  33 aaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaa 91  Q
    ||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  1533284 aaaaaaccaccattaatcctcaccaaaaat-agcatcagccaccacgaaaaccaataaa 1533341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 14950883 - 14950818
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccac 78  Q
    ||||| || |||||| |||| |||| ||||||||||||||||||||||||||  ||||||| ||||    
T  14950883 aaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaataccagccaccac 14950818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 9910627 - 9910694
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    ||||| || |||||| |||| |||| |||| ||||||||| ||||||||||| |||||||| ||||||    
T  9910627 aaaactaccattaaccaccacaaaaaccacaattaatccttaccaaaaatcaacaccagccaccacga 9910694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 28164936 - 28164895
Alignment:
Q  39 ccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    ||||||||| |||||||| |||||||||||||||| ||||||    
T  28164936 ccaccattactcctcaccgaaaatcagcaccagccaccacga 28164895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 8039193 - 8039291
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    ||||| || |||||| ||||||||| |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||| ||||||    
T  8039193 aaaactaccattaaccaccaaaaaa-ccaccagtaatcctcaccaaaaaccagcatcagccaccacgaaaaccaataaaccccactgaccctctcatcag 8039291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 27786891 - 27786790
Alignment:
Q  9 accaaaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctccca 108  Q
    ||||||||| || ||||||  |||||| | ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||| ||||||||    
T  27786891 accaaaaactaccattaacctccaaaaca-ccaccattaatcctcactaaaaa-cagcaccagccaccacgaaaaccaataaaccccactggccctccca 27786794  T
Q  109 tcag 112  Q
    ||||    
T  27786793 tcag 27786790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 15495882 - 15495940
Alignment:
Q  22 attaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    |||||| ||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  15495882 attaaccaccaagaaaaccaccattaatcctcaccaaaaaccagcaccagccaccacga 15495940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 2077522 - 2077464
Alignment:
Q  22 attaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    |||||| |||| |||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  2077522 attaaccaccacaaaaaccaccattaatcctcaccaaaaatcggtaccagccaccacga 2077464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 11814696 - 11814756
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcc 73  Q
    ||||| || |||||| | || |||| ||||||||||||||||||||||| |||||||||||    
T  11814696 aaaactaccattaaccatcacaaaaaccaccattaatcctcaccaaaaaccagcaccagcc 11814756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 11366696 - 11366787
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctc 105  Q
    ||||| || |||||| ||||||||| |||||| | |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  11366696 aaaactaccattaaccaccaaaaaa-ccaccaatgatcctcaccaaaaaccagcatcagccgccacgaaaaccaataaactccactgaccctc 11366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 9566800 - 9566898
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    ||||| || |||||| ||||||||| |||||| |||||||||||||||| || |||| ||| || ||||||||||||||| |||||||||||||||||||    
T  9566800 aaaactaccattaaccaccaaaaaa-ccaccaataatcctcaccaaaaaccaacacccgccacctcgaaaaccaataaaccccactgaccctcccatcag 9566898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 32747764 - 32747699
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccac 78  Q
    ||||| || |||||| |||| |||| |||||||||  ||||||||||||||||||| |||| ||||    
T  32747764 aaaactaccattaaccaccacaaaaaccaccattacacctcaccaaaaatcagcactagccaccac 32747699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 40600039 - 40599965
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaa 87  Q
    ||||| || |||||| |||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  40600039 aaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaacaccagccaccacgaaaaccaa 40599965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 24867253 - 24867186
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    ||||| || |||||| | || |||| |||||||||||||||||||||||| |||||||||| ||||||    
T  24867253 aaaactaccattaaccaacacaaaaaccaccattaatcctcaccaaaaattagcaccagccaccacga 24867186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 42268933 - 42268882
Alignment:
Q  29 accaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  42268933 accacaaaaaccaccattaatcctcaccaaaaatcagaaccagccaccacga 42268882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 27170329 - 27170263
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacg 79  Q
    ||||| || |||||| |||| |||| ||||||||||||||||||||||| || |||||||| |||||    
T  27170329 aaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaagcaacaccagccaccacg 27170263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 26331265 - 26331198
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    ||||| || |||||| |||| |||| |||||||||||||||||||||||  |||||||| | ||||||    
T  26331265 aaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaacaagcaccagacaccacga 26331198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 40680879 - 40680927
Alignment:
Q  22 attaactaccaaaaaatccaccattaatcctcaccaaaaatcagcacca 70  Q
    |||||| ||||  ||| ||||||||||||||||||||||| ||||||||    
T  40680879 attaaccaccacgaaaaccaccattaatcctcaccaaaaaccagcacca 40680927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 10182063 - 10182136
Alignment:
Q  39 ccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    ||||||||||||||| | ||||| ||||||||||| |||||||||||||||||| |||||| || |||||||||    
T  10182063 ccaccattaatcctccctaaaaaccagcaccagccaccacgaaaaccaataaaccccactggccttcccatcag 10182136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 38499212 - 38499290
Alignment:
Q  33 aaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    ||||| |||||| |||||||||| ||||| ||||| ||||| |||| |||||||||||||||||||||||||| ||||||    
T  38499212 aaaaagccaccagtaatcctcacaaaaaa-cagcatcagccaccacaaaaaccaataaactccactgaccctctcatcag 38499290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 23635876 - 23635922
Alignment:
Q  34 aaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  23635876 aaaaaccaccattaatcctcaccaaaaatcagcaccagcctccacga 23635922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 5515301 - 5515352
Alignment:
Q  29 accaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    |||| |||| |||||||||||||||||||||||||||||||| || ||||||    
T  5515301 accacaaaaaccaccattaatcctcaccaaaaatcagcaccaaccaccacga 5515352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 23635828 - 23635864
Alignment:
Q  34 aaaatccaccattaatcctcaccaaaaatcagcacca 70  Q
    |||| ||||||||||||||||||||||||||||||||    
T  23635828 aaaaaccaccattaatcctcaccaaaaatcagcacca 23635864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 15050210 - 15050143
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    ||||| || |||||| |||| |||| ||| |||||||||||||||||||  |||||||||| ||||||    
T  15050210 aaaactaccattaaccaccacaaaaaccatcattaatcctcaccaaaaactagcaccagccaccacga 15050143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 31699222 - 31699289
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    ||||| || |||||| |||| |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  31699222 aaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacga 31699289  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 46743058 - 46742976
Alignment:
Q  29 accaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    ||||||||| ||||||||||||||||| ||||| || || ||||  |||||||||||||||||| ||||||| |||||||||||    
T  46743058 accaaaaaaaccaccattaatcctcacaaaaaa-caacatcagctaccacgaaaaccaataaaccccactgatcctcccatcag 46742976  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 11387447 - 11387513
Alignment:
Q  39 ccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaaccaataaactccactgaccctc 105  Q
    |||||| |||||||||||||||| ||||| ||||   ||||||||||||||||| ||| ||||||||    
T  11387447 ccaccagtaatcctcaccaaaaaccagcatcagcaatcacgaaaaccaataaaccccattgaccctc 11387513  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 269936 - 270008
Alignment:
Q  41 accattaatcctcaccaaaaatc-agcaccagcctccacgaaaaccaataaactccactgaccctcccatcag 112  Q
    |||| |||||||||||||||| | |||| ||||| |||||||||||||||||| | |||||||||| ||||||    
T  269936 accagtaatcctcaccaaaaaaccagcatcagccaccacgaaaaccaataaaccctactgaccctctcatcag 270008  T

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Target: scaffold0088 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 26994 - 27076
Alignment:
Q  32 aaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaacca--ataaactccactgaccctcccatcag 112  Q
    |||||| |||||| |||||||||||||||| ||||||| ||| ||  ||||||||  |||||| | |||||||||||||||||    
T  26994 aaaaaaaccaccagtaatcctcaccaaaaaccagcacccgccaccttgaaaaccaatataaacccaactgaccctcccatcag 27076  T

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Target: scaffold0725 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 1078 - 1160
Alignment:
Q  32 aaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccacgaaaacca--ataaactccactgaccctcccatcag 112  Q
    |||||| |||||| |||||||||||||||| ||||||| ||| ||  ||||||||  |||||| | ||||| |||||||||||    
T  1078 aaaaaaaccaccagtaatcctcaccaaaaaccagcacccgccaccttgaaaaccaatataaacccaactgaacctcccatcag 1160  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 12130548 - 12130585
Alignment:
Q  43 cattaatcctcaccaaaaatcagcaccagcctccacga 80  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  12130548 cattaatcctcaccaaaaaccagcaccagccaccacga 12130585  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 45873106 - 45873163
Alignment:
Q  13 aaaacgacaattaactaccaaaaaatccaccattaatcctcaccaaaaatcagcacca 70  Q
    ||||| || |||||| |||| |||| |||||||||||||||||||||||  |||||||    
T  45873106 aaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaacaagcacca 45873163  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 55728705 - 55728761
Alignment:
Q  22 attaactaccaaaaaatccaccattaatcctcaccaaaaatcagcaccagcctccac 78  Q
    |||||| |||| |||| |||||||||||||||||||||||  || ||||||| ||||    
T  55728705 attaaccaccacaaaaaccaccattaatcctcaccaaaaactagtaccagccaccac 55728761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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