View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19558_low_5 (Length: 368)
Name: NF19558_low_5
Description: NF19558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19558_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 14722427 - 14722763
Alignment:
| Q |
15 |
aaggttaatttgatgacactttaaaccatgttatcaaggttattgatgtttctacgatcacagcacaaccttgattaggtttattcaacttatgagtgac |
114 |
Q |
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| T |
14722427 |
aaggtaaatttgatgaaactttaaaccatggtatcaaggtttttgatgtttctacgatcacaacacaacgttgattaggtttattcaacttatgagtgac |
14722526 |
T |
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| Q |
115 |
ttggtataacttcacaccaaacaagggtgga-atgctccaatatccatgcatgtcacatgggttctagcattgaataaagtgtgtatgatctataagatt |
213 |
Q |
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| T |
14722527 |
ttggtataacttcacaccaaacaagggtggccatgctccaatatccata----tcacatgggttctagcattgaataaagtgtgtatgatctataagatt |
14722622 |
T |
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| Q |
214 |
ttagcatcttagcttaggatcacattggatctatgcatgtgactataaagactaaatcattattcaacatgcag----ttgtaaggtcaaccctcaaaag |
309 |
Q |
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| T |
14722623 |
ttagcatcttagcttaggatcacattggatctatgcatgtgactataaagactaaatcattattcaacatgcagttgtttgtaaggtcaaccctcaaaag |
14722722 |
T |
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| Q |
310 |
gacatatcatcctcatttttgtgtactaacatgtggacctt |
350 |
Q |
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| T |
14722723 |
gacatatcatcctcatttttgtgtactaacatgtggacctt |
14722763 |
T |
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