View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19558_low_6 (Length: 356)
Name: NF19558_low_6
Description: NF19558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19558_low_6 |
 | |
|
| [»] scaffold0524 (1 HSPs) |
| | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
| [»] scaffold0578 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 7104015 - 7103685
Alignment:
| Q |
7 |
tcgaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatac |
106 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7104015 |
tcgaataatagagccaacatagttgggaggttgttggtgagcatttaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaagac |
7103916 |
T |
|
| Q |
107 |
atgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaa |
206 |
Q |
| |
|
||||| ||||||||||||||| | ||||||||| |||| | ||||||||||||||||| ||||||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
7103915 |
atgtcatttgcaaattccaaacccttccgcatagctaaggattctgcaacctctgaatttggtaatgaaaagacttgccaataactagcatcaacgacaa |
7103816 |
T |
|
| Q |
207 |
caccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggagg |
306 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
7103815 |
caccttcattatctctcaccacaacaccaataccccacttatcaccctctatcggactttctgcgtcaacattaagcttatagaaaccactaaaaggagg |
7103716 |
T |
|
| Q |
307 |
tgttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
||| || ||||||||||| |||||||||||| |
|
|
| T |
7103715 |
tgtccaatgaacatcagaaattggcaaaatt |
7103685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 7109328 - 7108998
Alignment:
| Q |
7 |
tcgaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatac |
106 |
Q |
| |
|
||||| |||| ||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
7109328 |
tcgaataatagagccaacatagttaggaggttgttggcgagcatttaacgctaaaaccacattagaagcatctgattctgctataagattcaaaaaagac |
7109229 |
T |
|
| Q |
107 |
atgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaa |
206 |
Q |
| |
|
||||| ||| |||||| |||| | ||| ||||| ||| ||| ||||||||||||||||||| || || ||||||||||| ||||||||| |||||||| |
|
|
| T |
7109228 |
atgtcatttacaaatttcaaacccttctgcatagctatgtcttttgcaacctctgaatctggtgatgaaaagacttgccaagaactagcaccaacgacaa |
7109129 |
T |
|
| Q |
207 |
caccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggagg |
306 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||| |||||| |||||||||||| |||||| ||||| |
|
|
| T |
7109128 |
caccttcattatctctcaccacaacaccaataccccacttatcaccctctatcggactttctgcgtcgacattaagcttatagaaaccactaaaaggagg |
7109029 |
T |
|
| Q |
307 |
tgttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
||| || |||||||||||||||||||||||| |
|
|
| T |
7109028 |
tgtccaatgaacatcagatattggcaaaatt |
7108998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 40756434 - 40756763
Alignment:
| Q |
7 |
tcgaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatac |
106 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||| | ||| |||||||||||||| ||||||||||||||||||| || |
|
|
| T |
40756434 |
tcgaataatagagccaacatagttgggagattgttggtgagcattcaacgctgaaatcccataagaagcatctgattttgctataagattcagaaaagac |
40756533 |
T |
|
| Q |
107 |
atgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaa |
206 |
Q |
| |
|
|||||||||||||||| ||| | ||| |||| |||||||||| ||||||||||||||||||||| || | ||||| || ||||||||| |||||||| |
|
|
| T |
40756534 |
atgtcttttgcaaattacaatcccttctacatagctaaagcttccgcaacctctgaatctggtaatgaaaatacttgtcaggaactagcaccaacgacaa |
40756633 |
T |
|
| Q |
207 |
caccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggagg |
306 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||| ||||||||| |||| ||||||| |||||| ||||| |
|
|
| T |
40756634 |
caccttcattatctctcaccacaacaccaatatcccatttatcaccctctatcggacctgctgcatcaacattaagcttgtagaaaccactaaaaggagg |
40756733 |
T |
|
| Q |
307 |
tgttcagtgaacatcagatattggcaaaat |
336 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |
|
|
| T |
40756734 |
tgttcaatgaacataagatattggcaaaat |
40756763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 2059287 - 2059022
Alignment:
| Q |
23 |
acatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaatt |
122 |
Q |
| |
|
||||||||| | ||||||| |||| ||||||||| |||||||||||||||||| |||| ||||||| |||||||||| |||||||||| ||||||| |
|
|
| T |
2059287 |
acatagttgggatattgttgatgagtgttcaacgcttgaaccacattagaagcatcatattccgctataaaattcagaaaacacatgtctttagcaaatt |
2059188 |
T |
|
| Q |
123 |
ccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctct |
222 |
Q |
| |
|
||| | ||| ||||| ||||| ||| || ||||| |||||| ||||| || |||||| |||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
2059187 |
acaaccccttctgcatagctaaaactttagctacctccgaatctagtaatgaaaagactttccaacaactagcaccaacgaccacaccttcattatctct |
2059088 |
T |
|
| Q |
223 |
caccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttata |
288 |
Q |
| |
|
||| || ||||||||||| || ||| | || ||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
2059087 |
cacaacaacaccaatacctcatttacccccctctatcggacctgttgcgtccacatttagcttata |
2059022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 43473125 - 43473307
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| |||| |||||| || ||||||||| |||||||||||||| | |||||| ||||||||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
43473125 |
aatagagccgacataggtgggagattgttgatgagcattcaacgccagaaccacgttagaagcatcggattctgctataagatctagaaaagacatgtct |
43473224 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagca |
196 |
Q |
| |
|
|||||||||| |||| | ||||| ||| ||||| |||||||||||||||||||||||||| || | |||||||| ||||||||| |
|
|
| T |
43473225 |
tttgcaaatt-caaacccttccgtatagctaaaacttctgcaacctctgaatctggtaatgaaaatacttgccagcaactagca |
43473307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 28033716 - 28033546
Alignment:
| Q |
69 |
tagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctgg |
168 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| || |||||| ||||||||||| |||| |||||| || |
|
|
| T |
28033716 |
tagaagcatctgattctgatataagattcagaaaa--catgtcttttgcaaattttaaatcgtttcgcatagctaaagcttctccaacttctgaaacttt |
28033619 |
T |
|
| Q |
169 |
taattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccc |
241 |
Q |
| |
|
|||| || ||| ||| || ||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
28033618 |
taatgaaaagatttgtcagcaactagcatcaacgacaacatcttcattatctctcaccacaacaccaataccc |
28033546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 337
Target Start/End: Original strand, 11422868 - 11423133
Alignment:
| Q |
70 |
agaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggt |
169 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||| |||| || | |||||| | || |||||| ||| ||||| ||||||||| || |||| | |
|
|
| T |
11422868 |
agaagcatctgattcttctataagattcataaaacacatgactttcacacactccaaaccctttcgcatagctatagcttatgcaacctccgagtctgat |
11422967 |
T |
|
| Q |
170 |
aattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctg |
269 |
Q |
| |
|
|| || |||||||||| || |||||| |||| |||||||||||||||||| ||||| ||||| |||||||| ||| | | | |||| ||| ||||| |
|
|
| T |
11422968 |
aaaaaa-agacttgccagcagctagcagctacga-aacaccttcattatctcttaccacaacaccgataccccatttaccctcctttatcagacttgctg |
11423065 |
T |
|
| Q |
270 |
cgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
| ||||||||| | |||||||||| |||||| |||||||| || ||||||| | |||||||||||||| |
|
|
| T |
11423066 |
catcaacattaagattatagaaaccactaaaaggaggtgtccaatgaacattaaatattggcaaaatt |
11423133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 9745478 - 9745616
Alignment:
| Q |
34 |
agattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttc |
133 |
Q |
| |
|
||||||||| || |||||||||| ||||| |||||| |||||| |||||||||||||||||||||||| |||| ||||| ||||||| |||| | ||| |
|
|
| T |
9745478 |
agattgttgacgaacattcaacgccaaaactacattaagagcatccgattctgctataagattcagaaaagacatttctttcgcaaatttcaaacccttc |
9745577 |
T |
|
| Q |
134 |
cgcatatctaaagcttctgcaacctctgaatctggtaat |
172 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||| ||||| |
|
|
| T |
9745578 |
cgcataactaaagactctgcaacctctaaatcttgtaat |
9745616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 334
Target Start/End: Complemental strand, 44527603 - 44527288
Alignment:
| Q |
23 |
acatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaatt |
122 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| | || |||||||||||||| | | |||||| ||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
44527603 |
acataggtgaaagattgttgatgagcattcaatgtcaataccacattagaagcgtgtaattctgttataagattcataaaagacatgtctttcgcaaatt |
44527504 |
T |
|
| Q |
123 |
ccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctct |
222 |
Q |
| |
|
||| ||||||||| ||| ||||| | |||||| ||| |||||||| || | | ||| || || |||||| |||||||||| ||||||||||||| |
|
|
| T |
44527503 |
ttaaactcttccgcataactagagcttttacaacctatgagtctggtaaagaaaatatttgtcagcagctagcagcaacgacaacatcttcattatctct |
44527404 |
T |
|
| Q |
223 |
caccaccacaccaataccccact----tatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaac |
318 |
Q |
| |
|
|||| ||| ||||||| ||| | | | |||| ||||| | || | ||||||||| |||||||||||| |||||| |||| | |||| ||||| |
|
|
| T |
44527403 |
tcccacgacaacaataccttactctcctctaaggctctaacggacatactacatcaacattaagcttatagaaaccactaaaaggagatattcaatgaac |
44527304 |
T |
|
| Q |
319 |
atcagatattggcaaa |
334 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
44527303 |
atcatacattggcaaa |
44527288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 141 - 337
Target Start/End: Original strand, 9742037 - 9742233
Alignment:
| Q |
141 |
ctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacc-ttcattatctctcaccaccacaccaatac |
239 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| | || || |||| | |||||||| ||||||||||||| |||| ||||| ||||||| || | ||||| |
|
|
| T |
9742037 |
ctaaagattctgcaacctctaaatctggtagtgaaaaggcttgataggaactagcagtaacgacaacacccttcagtatctatcaccacaaccctaatac |
9742136 |
T |
|
| Q |
240 |
cccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
||||||| | || || ||||||| |||||| ||||||||| |||||||||||| ||||| |||||||| | |||||||||||||||| ||||||| |
|
|
| T |
9742137 |
cccacttccc-ccatccatcggacatgctgcatcaacattaagcttatagaaacctctaaaaggaggtgtcaaatgaacatcagatattgacaaaatt |
9742233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 89 - 329
Target Start/End: Original strand, 9747680 - 9747918
Alignment:
| Q |
89 |
ataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaac |
188 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||| |||| | ||| ||||| |||||| ||||||||||||| |||||| |||| || | ||||| || |
|
|
| T |
9747680 |
ataagattcagaaaagacatctcttttccaaatttcaaacccttctgcatagctaaagattctgcaacctctaaatctgttaatgaaaacacttgacatg |
9747779 |
T |
|
| Q |
189 |
aactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttata |
288 |
Q |
| |
|
| |||| | | || | ||||||||||||||| || |||| |||| ||||||||||||| | || || || ||||| |||| ||||||||| ||||| | |
|
|
| T |
9747780 |
a-ctagtagcagcggcgacaccttcattatctatccccacaacactaataccccacttacc-ccatccattagacctactgcatcaacattaagcttaca |
9747877 |
T |
|
| Q |
289 |
gaaacaactaaacggaggtgttcagtgaacatcagatattg |
329 |
Q |
| |
|
||||| ||| || |||||||| || |||||||||||||||| |
|
|
| T |
9747878 |
gaaaccacttaaaggaggtgtccaatgaacatcagatattg |
9747918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 9745690 - 9745752
Alignment:
| Q |
267 |
ctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagatattg |
329 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
9745690 |
ctgcatcaacattaagcttatagaaactactaaaaggaggtgttcaatgaacatcatatattg |
9745752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 17318729 - 17318806
Alignment:
| Q |
7 |
tcgaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattc |
84 |
Q |
| |
|
||||| |||| || |||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
17318729 |
tcgaataatagagtcaacatagttaggagattggtggtgagtattcaacgctaaaaccacattagaaacatctaattc |
17318806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 2577366 - 2577439
Alignment:
| Q |
50 |
ttcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattc |
123 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||||| |||||||| |||||||| ||| ||| |||| |||||| |
|
|
| T |
2577366 |
ttcaacgctaataccacattaggagcatatgattccactataagaatcagaaaagacacgtcctttgtaaattc |
2577439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 21947410 - 21947491
Alignment:
| Q |
34 |
agattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtctttt |
115 |
Q |
| |
|
||||||||| || |||||||||| ||||| | ||||||||||| |||||| || ||||||| ||||||||||||| |||| |
|
|
| T |
21947410 |
agattgttgatgtgcattcaacgtcaaaactatattagaagcatttgattccactttaagatttagaaaatacatgtttttt |
21947491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 11422799 - 11422851
Alignment:
| Q |
33 |
aagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattct |
85 |
Q |
| |
|
|||||||||| |||| ||||||||| || || ||||||||| ||||||||||| |
|
|
| T |
11422799 |
aagattgttgatgagtattcaacgccaagactacattagaaacatctgattct |
11422851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 21947525 - 21947597
Alignment:
| Q |
155 |
acctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcacca |
227 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||| || || | ||||| ||| |||||||||||||| |
|
|
| T |
21947525 |
acctctaaatctggtaataaaatgacttgccaacaactaacaagaatggcaacatctttattatctctcacca |
21947597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 8970300 - 8969972
Alignment:
| Q |
9 |
gaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacat |
108 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
8970300 |
gaagaatagagtcaacatagttgggagattgttggtgagcattcaacgctaaaaccacatcagaagcatttgattctgctataagattcagaaaagacat |
8970201 |
T |
|
| Q |
109 |
gtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaaca |
208 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||||||||||||||||| | |||| |||||| || |||||||| | ||||| ||| |||||||||| |
|
|
| T |
8970200 |
gtcttttgcaaattccaaactcttccgtatagctaaagcttctgcaacctttaaatccggtaatgaaaagacttgctagaaactaacaccaacgacaaca |
8970101 |
T |
|
| Q |
209 |
ccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtg |
308 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||| |||||| |||||| |
|
|
| T |
8970100 |
ccttcattatctctcaccacaacaccaataccccacttatcaccttctatcagacctgctgcatcaacattaaacttataaaaaccactaaaaagaggtg |
8970001 |
T |
|
| Q |
309 |
ttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
| || ||||||||| |||||| ||||||| |
|
|
| T |
8970000 |
tccaatgaacatcacatattgacaaaatt |
8969972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 9492616 - 9492940
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| |||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
9492616 |
aatagagccaacataattgggagattgttgatgagcattcaacgctaaaacaacattagaagcatctgattctgctataagattcagaaaacacacgtct |
9492715 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacctt |
212 |
Q |
| |
|
||| |||||| |||| | || |||||| ||||||||||| ||||| |||||||||||||| || ||||||| || |||||||| || |||||||| || |
|
|
| T |
9492716 |
tttacaaatttcaaaccctttcgcatagctaaagcttctacaacccctgaatctggtaatgaaaagacttgtcaggaactagcatcaaggacaacacttt |
9492815 |
T |
|
| Q |
213 |
cattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttca |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||||||| |||||| |||||||| || |
|
|
| T |
9492816 |
cattatctctcaccacaacaccaataccccctttatcaccctctatcggacctgctgcatcaatatttagcttatagaaaccactaaaaggaggtgtcca |
9492915 |
T |
|
| Q |
313 |
gtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
9492916 |
atgaacgtcagatattggcaaaatt |
9492940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 19237768 - 19237444
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||| |
|
|
| T |
19237768 |
aatagagccaacatagttgggagattgtaggtgaacattcaacgctaaaactacattagaagcagctgattctgctataagatttagaaaagacatgtct |
19237669 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacctt |
212 |
Q |
| |
|
|||||||||||||| | || |||||| |||||||||||||||||| ||||||||||||| || | | || || ||||||||| |||||||||||||| |
|
|
| T |
19237668 |
gttgcaaattccaaaccctttcgcatagctaaagcttctgcaacctttgaatctggtaatgaaaatatatgtcatgaactagcaccaacgacaacacctt |
19237569 |
T |
|
| Q |
213 |
cattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttca |
312 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| ||||||||| || ||| ||||| ||| ||||||| |||| |||||| |||||||| || |
|
|
| T |
19237568 |
cattatctctcaccgcaacaccaataccccacttatcaccctctatcggatatgttgcatcaacgttaagcttataaaaaccactaaaaggaggtgtcca |
19237469 |
T |
|
| Q |
313 |
gtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
19237468 |
atgaacatcagatattggcaaaatt |
19237444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 19310952 - 19310628
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||| |
|
|
| T |
19310952 |
aatagagccaacatagttgggagattgtaggtgaacattcaacgctaaaactacattagaagcagctgattctgctataagatttagaaaagacatgtct |
19310853 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacctt |
212 |
Q |
| |
|
|||||||||||||| | || |||||| |||||||||||||||||| ||||||||||||| || | | || || ||||||||| |||||||||||||| |
|
|
| T |
19310852 |
gttgcaaattccaaaccctttcgcatagctaaagcttctgcaacctttgaatctggtaatgaaaatatatgtcatgaactagcaccaacgacaacacctt |
19310753 |
T |
|
| Q |
213 |
cattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttca |
312 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| ||||||||| || ||| ||||| ||| ||||||| |||| |||||| |||||||| || |
|
|
| T |
19310752 |
cattatctctcaccgcaacaccaataccccacttatcaccctctatcggatatgttgcatcaacgttaagcttataaaaaccactaaaaggaggtgtcca |
19310653 |
T |
|
| Q |
313 |
gtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
19310652 |
atgaacatcagatattggcaaaatt |
19310628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 337
Target Start/End: Original strand, 16435764 - 16436080
Alignment:
| Q |
21 |
caacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaa |
120 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16435764 |
caacatagttgggagattgttagtgagcattcaacgctaaaaccacattagaaacatctgattctgctataagattcagaaaagacatgtcttttgcaaa |
16435863 |
T |
|
| Q |
121 |
ttccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatct |
220 |
Q |
| |
|
|| |||| | || | |||| ||||| |||||||||||||| ||| ||||||| || || | || || ||||||||| |||||||||||||||||||||| |
|
|
| T |
16435864 |
tttcaaaccctttcccatagctaaaacttctgcaacctcttaatttggtaatgaaaagccatgtcaggaactagcaccaacgacaacaccttcattatct |
16435963 |
T |
|
| Q |
221 |
ctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacat |
320 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| |||||| ||| |||||| ||| ||||| |||||||||||| |||||| |||||| | | ||||||| |
|
|
| T |
16435964 |
ctcaccacaacaccactaccccacttatcaccctctatcagacttgctgcatcagcattaagcttatagaaaccactaaaaggaggtatctaatgaacat |
16436063 |
T |
|
| Q |
321 |
cagatattggcaaaatt |
337 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
16436064 |
caaatattggcaaaatt |
16436080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 247
Target Start/End: Complemental strand, 38312061 - 38311875
Alignment:
| Q |
64 |
cacattagaagcatctgattctgctataagattcagaaaata---catgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctct |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| ||| | ||||||||| ||||||||||| | |||| | |
|
|
| T |
38312061 |
cacattagaagcatctgattctgctataagattaaaaaaagaaaacatgtcttttgcaaatttcaaccccttccgcatagctaaagcttctcctaccttt |
38311962 |
T |
|
| Q |
161 |
gaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccactta |
247 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||| ||| |||| |||||||| |||||| || || |||||||||||||||||| |
|
|
| T |
38311961 |
gaatctggtaatgaaaagacttgacaacaactagcagcaaccacaataccttcataatctcttacaacaacaccaataccccactta |
38311875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 2537827 - 2538118
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| |||| |||||| || ||||| |||| |||||||||| ||| || |||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
2537827 |
aatagagccgacataggtggaagatcgttgatgagcattcagcgccaagaccacattagaagcatctgattctactaaaagattcagaaaagacatgtct |
2537926 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaac----agacttgccaacaactagcactaacgacaaca |
208 |
Q |
| |
|
|| |||||| |||| | || ||||| |||| |||||||||| ||| ||| ||| |||||| ||| |||||| |||||| ||| ||| |||||| |
|
|
| T |
2537927 |
ttcacaaatttcaaacccttttgcatagataaaacttctgcaacatctaaatatggcaattaatgaaaagatttgccagcaactaacaccaactacaaca |
2538026 |
T |
|
| Q |
209 |
ccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaa |
300 |
Q |
| |
|
|| ||||||||||||||| | ||| |||||||| ||||| | || | |||| ||| | |||| ||||||||| | || ||||||| |||||| |
|
|
| T |
2538027 |
ccgtcattatctctcaccgcaacatcaatacccaacttacccccctttatcagacttactgcatcaacattaagtttgtagaaaccactaaa |
2538118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 14154275 - 14154170
Alignment:
| Q |
18 |
agccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgc |
117 |
Q |
| |
|
|||||||||| |||| |||||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
14154275 |
agccaacataattgagagattgttagtgaacattcaacgctaaaactacattagaagcatctgattctgccataagattcagaaaataagcgtcttttgc |
14154176 |
T |
|
| Q |
118 |
aaattc |
123 |
Q |
| |
|
|||||| |
|
|
| T |
14154175 |
aaattc |
14154170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 1154720 - 1154775
Alignment:
| Q |
59 |
aaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttt |
114 |
Q |
| |
|
||||||| |||| || ||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
1154720 |
aaaaccaaattataaacatatgattatgctataagattcagaaaagacatgtcttt |
1154775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 9414559 - 9414647
Alignment:
| Q |
105 |
acatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaacta |
193 |
Q |
| |
|
|||| |||||| |||||| |||| | ||||||||| ||||| ||||||||||||| || ||| ||| || ||||||| ||||||||| |
|
|
| T |
9414559 |
acatatcttttacaaatttcaaacccttccgcatagctaaatcttctgcaacctccgagtctaataaagaaaagacttgtcaacaacta |
9414647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 25616416 - 25616734
Alignment:
| Q |
18 |
agccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgc |
117 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
25616416 |
agccaacatagttgggagattgttggttagcattcaacgctaaaaccacattagaagcaactgattctgctataagattcaaaaaagacatgtcttttgc |
25616515 |
T |
|
| Q |
118 |
aaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcatta |
217 |
Q |
| |
|
|||||||||| | ||||||||| ||||||| |||||||||||||||||||||||| || |||||||||| | ||||||| || |||||||||||||||| |
|
|
| T |
25616516 |
aaattccaaacccttccgcatagctaaagcctctgcaacctctgaatctggtaatgaaaagacttgccaggagctagcaccaaggacaacaccttcatta |
25616615 |
T |
|
| Q |
218 |
tctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaa |
317 |
Q |
| |
|
||||||| ||| | ||||||||||||||||||| |||| ||| ||||| ||| ||||||||| |||||||||||| |||||| |||||||| || || | |
|
|
| T |
25616616 |
tctctca-cacaataccaataccccacttatcatcttccatcagacctactgtatcaacattaagcttatagaaaccactaaaaggaggtgtccaatgta |
25616714 |
T |
|
| Q |
318 |
catcagatattggcaaaatt |
337 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25616715 |
catcagatattggcaaaatt |
25616734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 11790589 - 11790913
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| ||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || || || |
|
|
| T |
11790589 |
aatagagccaacataggtgagagaatgttggtgagcattcaatgctaaaaccacattagaagcgtctgattctgctataagattcagaaaagacctgcct |
11790688 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacctt |
212 |
Q |
| |
|
|| |||||||||||| |||| |||| || ||| ||||||||||||||||||| ||||| || |||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
11790689 |
ttagcaaattccaaactcttccacatagcttaagtttctgcaacctctgaatctagtaatgaaaagacttgccagaaactagcaccaacgataacacctt |
11790788 |
T |
|
| Q |
213 |
cattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttca |
312 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| |||||| || ||||||| ||||||||| |||||||||||| |||||| |||||||| || |
|
|
| T |
11790789 |
cattatctctcaccgcaacaccaataccccacttatcaccctctatcagatctgctgcatcaacattaagcttatagaaaccactaaaaggaggtgtcca |
11790888 |
T |
|
| Q |
313 |
gtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11790889 |
atgaacatcagatattggcaaaatt |
11790913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 64 - 299
Target Start/End: Original strand, 9111932 - 9112167
Alignment:
| Q |
64 |
cacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaa |
163 |
Q |
| |
|
|||||| |||||||| ||| ||||||| ||||| ||||| |||||||||| ||||||||||| | ||||||||| ||||||||||||| || || ||| |
|
|
| T |
9111932 |
cacattggaagcatcaaattttgctatatgattctgaaaacacatgtctttagcaaattccaaccccttccgcatagctaaagcttctgctacatccgaa |
9112031 |
T |
|
| Q |
164 |
tctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggac |
263 |
Q |
| |
|
||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||| || || |||| | |
|
|
| T |
9112032 |
tctagtaatgaaaggacttgccaacaactagcagcaacgacaacaccttcattatctctcacaacaacaccaataccccatttatccccctcgatcgagc |
9112131 |
T |
|
| Q |
264 |
ctgctgcgtcaacattatgcttatagaaacaactaa |
299 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
9112132 |
ctgctgcatcaacatttaacttatagaaaccactaa |
9112167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 14069150 - 14069307
Alignment:
| Q |
180 |
cttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacatt |
279 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14069150 |
cttgccaggaactaacaccaacgacaacaccttcattatctctcacaacaaccccaatgccccacttatcaccttctatcggacctgctgcatcaacatt |
14069249 |
T |
|
| Q |
280 |
atgcttatagaaacaactaaacggaggtgttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
| |||||||| ||| |||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
14069250 |
aagcttataggaaccactaaaaggaggtgtccaatgaacatcagatattggcaaaatt |
14069307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 14379178 - 14379335
Alignment:
| Q |
180 |
cttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacatt |
279 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14379178 |
cttgccaggaactaacaccaacgacaacaccttcattatctctcacaacaaccccaatgccccacttatcaccttctatcggacctgctgcatcaacatt |
14379277 |
T |
|
| Q |
280 |
atgcttatagaaacaactaaacggaggtgttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
| |||||||| ||| |||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
14379278 |
aagcttataggaaccactaaaaggaggtgtccaatgaacatcagatattggcaaaatt |
14379335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 23663565 - 23663453
Alignment:
| Q |
61 |
aaccacattagaagcatctgattctgctataagattca-gaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctc |
159 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| |||| |||||| ||||| ||||| ||| || |||| |||| |||||||| ||| ||||| |
|
|
| T |
23663565 |
aaccacactagaagcatctgattttgctataagattcataaaaaaacatgtgttttgtaaatttcaactcattccacatagttaaagcttatgctacctc |
23663466 |
T |
|
| Q |
160 |
tgaatctggtaat |
172 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
23663465 |
tgaatctagtaat |
23663453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 31001579 - 31001484
Alignment:
| Q |
77 |
tctgattctgctataagattcagaaaat-acatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaa |
171 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||||||| ||||||| |||| | ||| ||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
31001579 |
tctgattctgccataagattcataaaaagacatgtctttcgcaaatttcaaaaccttctgcatagctaaagcttctgcaacctatgagtctggtaa |
31001484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 37819384 - 37819462
Alignment:
| Q |
61 |
aaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcata |
139 |
Q |
| |
|
||||||||||||| ||| |||||| || |||||||| |||||| | |||||||||||||||| ||| || |||| |||| |
|
|
| T |
37819384 |
aaccacattagaatcatatgattccgccataagatttagaaaagatatgtcttttgcaaatttcaactccttccacata |
37819462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 43542410 - 43542130
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43542410 |
aatagagccagcatagttgggagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaagacatgtct |
43542311 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacctt |
212 |
Q |
| |
|
|| ||||| |||||| | ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
43542310 |
ttcgcaaactccaaacccttccgcatagctaaagcttctgcaacctctgaatctggtaatgaaaagatttgccaaaaactagcaccaacgacaacacctt |
43542211 |
T |
|
| Q |
213 |
cattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaac |
293 |
Q |
| |
|
||||||||||||| || | | ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
43542210 |
cattatctctcacaacaatcctaataccccacttatcaccttctatcggacttgctgcatcaacattcagcttatagaaac |
43542130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 325
Target Start/End: Complemental strand, 31438713 - 31438453
Alignment:
| Q |
64 |
cacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaa |
163 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||| | |||||||||||||||| ||| | ||||||||| ||||||||| || |||| |||| |
|
|
| T |
31438713 |
cacattagaagcatatgattctaatataagatttagaaaagatatgtcttttgcaaattgcaaccccttccgcatagctaaagcttttggtacctatgaa |
31438614 |
T |
|
| Q |
164 |
tctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggac |
263 |
Q |
| |
|
| | ||||| || | ||||| || ||||||||| ||||||||||||||| ||||||||||| | ||||||||||| || ||| | || ||| |||||| |
|
|
| T |
31438613 |
tttagtaatgaaaatacttgtcagcaactagcagcaacgacaacaccttcgttatctctcactgcaacaccaatacctcatttacccccctctgtcggac |
31438514 |
T |
|
| Q |
264 |
ctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagat |
325 |
Q |
| |
|
|||||| |||||||| ||||||| ||| ||| || ||||||| || |||||||||||| |
|
|
| T |
31438513 |
atgctgcatcaacatttaacttatagcaaccact-gacagaggtgtccaatgaacatcagat |
31438453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 726205 - 726362
Alignment:
| Q |
68 |
ttagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctg |
167 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||| || |||||| | || ||||| ||||||| | |||||||||| |
|
|
| T |
726205 |
ttagaagcgtctgattccactataagattcagaaaagacacgtcttttgcaaattctaactctttctgtgtagctaaaacttctgctatctctgaatcta |
726304 |
T |
|
| Q |
168 |
gtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcac |
225 |
Q |
| |
|
||||| || | || || |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
726305 |
gtaatgaaaaaacgtgacaacaactagcactaacgacaagaccttcataatctctcac |
726362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 15262290 - 15262508
Alignment:
| Q |
20 |
ccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaa |
119 |
Q |
| |
|
||||||||| || ||| |||||| ||||| || ||||| || |||||||||||| |||| ||||||| || ||| ||| |||| | |||||||| |||| |
|
|
| T |
15262290 |
ccaacataggtggaagtttgttgatgagcgtttaacgcaaagaccacattagaaacatcaaattctgcaatgagactcaaaaaagatatgtctttcgcaa |
15262389 |
T |
|
| Q |
120 |
attccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatc |
219 |
Q |
| |
|
|||| ||| | | || |||| |||| |||| ||||| |||| || || |||| || |||||||| | |||||| || ||| ||||||||||||||||| |
|
|
| T |
15262390 |
attcaaaaccctaccacataactaaggcttttgcaatctctaaacctaataatgaaaagacttgcaagcaactaacagcaacaacaacaccttcattatc |
15262489 |
T |
|
| Q |
220 |
tctcaccaccacaccaata |
238 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
15262490 |
tctcaccgcaacaccaata |
15262508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 1257183 - 1257335
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| |||| |||||| || ||||||||| ||| ||||||| | |||| ||||||| |||||| |||||||||| ||| |||||||||| | |||||| |
|
|
| T |
1257183 |
aatagagccgacataggtgggagattgttgatgaacattcaaacccaaaatcacattaaaagcatatgattctgctgtaacattcagaaaagatatgtct |
1257282 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatct |
166 |
Q |
| |
|
|| |||||||| | | |||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
1257283 |
ttcgcaaattcaagct-tttctgtatatctaaagcttctgcaacctttgaatct |
1257335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 9438537 - 9438603
Alignment:
| Q |
37 |
ttgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaa |
103 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
9438537 |
ttgttgatgagcattaaacgtcaaaaccacattagaaacatctgattctgctataagattcataaaa |
9438603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 32675544 - 32675480
Alignment:
| Q |
177 |
agacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccc |
241 |
Q |
| |
|
|||| ||||||||||||||| || | ||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
32675544 |
agacctgccaacaactagcagcaaggtcaacacctttattatctctcaacacaacaccaataccc |
32675480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 43541581 - 43541540
Alignment:
| Q |
295 |
actaaacggaggtgttcagtgaacatcagatattggcaaaat |
336 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
43541581 |
actaaaaggaggtgttcaatggacatcagatattggcaaaat |
43541540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 26024875 - 26024544
Alignment:
| Q |
7 |
tcgaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatac |
106 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26024875 |
tcgaataatagagccaacatagttaggagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaagac |
26024776 |
T |
|
| Q |
107 |
atgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaa |
206 |
Q |
| |
|
| ||||| |||||||||||| | ||| |||| ||||||||| | ||||||||||||||||||| || |||||||||| ||| | ||| |||||||| |
|
|
| T |
26024775 |
acatctttcgcaaattccaaacccttctacatagctaaagcttatataacctctgaatctggtaatgaagagacttgccaggaaccaacaccaacgacaa |
26024676 |
T |
|
| Q |
207 |
caccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaa---cgg |
303 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||| |||||| || |
|
|
| T |
26024675 |
caccttcattatctctcaaaacaacaccaataccccactcatcaccttctatcggacctgctgcatcaacatcaagcttatagaaaccactaaatggagg |
26024576 |
T |
|
| Q |
304 |
aggtgttcagtgaacatcagatattggcaaaa |
335 |
Q |
| |
|
|||||| || ||||||| |||||||||||||| |
|
|
| T |
26024575 |
aggtgtccaatgaacattagatattggcaaaa |
26024544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 23497118 - 23496861
Alignment:
| Q |
21 |
caacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaa |
120 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
23497118 |
caacatagttgggagattgttggtgaccattcaacgctaaaaccacattagaagcatccgattctgctacaaaattcagaaaagacatgtcttttgcaaa |
23497019 |
T |
|
| Q |
121 |
ttccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatct |
220 |
Q |
| |
|
|||||| | ||| || || ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
23497018 |
ttccaatcccttctgcgtagttaaagcttctgcaacctctgaatctggtaatgaaaagacttgccaagaactagcaccaacgacaacaccttcattatct |
23496919 |
T |
|
| Q |
221 |
ctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttata |
288 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||| ||||||||| ||||||| |
|
|
| T |
23496918 |
----------caccaataccccacttatcaccctctatcgaacctactgcatcaacattaagcttata |
23496861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 17539030 - 17538715
Alignment:
| Q |
22 |
aacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaat |
121 |
Q |
| |
|
|||||||||| | || |||| |||| ||||||||| |||| |||| ||||||||||||||| |||||||||||||| |||| || | ||||| ||||| |
|
|
| T |
17539030 |
aacatagttgggaaatcgttgatgagtattcaacgccaaaatcacactagaagcatctgattatgctataagattcataaaacacgtatctttcgcaaaa |
17538931 |
T |
|
| Q |
122 |
tccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctc |
221 |
Q |
| |
|
| ||| | || ||||| ||||||||| |||||||||| ||||||||||| || ||||||| || |||| ||| ||||||||||||||||| ||||| |
|
|
| T |
17538930 |
ttcaatcccttatgcatagctaaagcttttgcaacctctaaatctggtaataaaaagacttgtcaggaacttgcagcaacgacaacaccttcatcatctc |
17538831 |
T |
|
| Q |
222 |
tcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatc |
321 |
Q |
| |
|
||||||| ||| ||||| |||||||||| || ||||||| || |||| | ||||||||| |||||||||||| |||||| |||||||| | |||||||| |
|
|
| T |
17538830 |
tcaccacaacatcaatatcccacttatccccctctatcgaacatgctccatcaacattaagcttatagaaaccactaaaaggaggtgtcaaatgaacatc |
17538731 |
T |
|
| Q |
322 |
agatattggcaaaatt |
337 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
17538730 |
agatattaacaaaatt |
17538715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 5007498 - 5007605
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| | ||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
5007498 |
aatagagccaacatagttgagagattgttggtggggattcaacgctagaaccacatttgaaccatctaattctgctataagattcagaaaagacatgtct |
5007597 |
T |
|
| Q |
113 |
tttgcaaa |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
5007598 |
tttgcaaa |
5007605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 12622383 - 12622448
Alignment:
| Q |
61 |
aaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaa |
126 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12622383 |
aaccacattagaagcatctgattccgttataagattcagaaaatacacatcttttgcaaattccaa |
12622448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 24310304 - 24310517
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagatt-gttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtc |
111 |
Q |
| |
|
|||| |||| |||||| ||| ||||| |||| ||| ||||||||| ||||||||| || |||||||||| || | | ||||||| |||| |||||| |
|
|
| T |
24310304 |
aatagagccgacatagctgagagatttgttgacgagtattcaacgcaaaaaccacaataaaagcatctgactc--caacgagattcacaaaagacatgtt |
24310401 |
T |
|
| Q |
112 |
ttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacct |
211 |
Q |
| |
|
||| |||||||| ||| | ||||||||| | | ||||||||||| ||| ||||| |||| || |||||||| | |||||| || ||||||||||||| |
|
|
| T |
24310402 |
tttcgcaaattcaaaacccttccgcatagttgaggcttctgcaacttctaaatcttataatgaaaagacttgcgagcaactaacatcaacgacaacacct |
24310501 |
T |
|
| Q |
212 |
tcattatctctcacca |
227 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
24310502 |
tcgttatctctcacca |
24310517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 35025121 - 35025191
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgatt |
83 |
Q |
| |
|
|||| |||| |||||| || |||||||||| |||||||||| || || ||||| |||||||||||||||| |
|
|
| T |
35025121 |
aatagagccgacataggtggaagattgttgatgagcattcagtgccaagaccaccttagaagcatctgatt |
35025191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 32401716 - 32402032
Alignment:
| Q |
7 |
tcgaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatac |
106 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||| |||||||| |||| ||||||||| ||| || |
|
|
| T |
32401716 |
tcgaataatagagccaacatagttgggagattgttggtgagcattcaacgctacaacaacattaaaagcatctcattcaactataagat-----aaagac |
32401810 |
T |
|
| Q |
107 |
atgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaa |
206 |
Q |
| |
|
||||||||||||||||||||| | || |||||| ||| |||||| |||||||||||||||||||| || ||||||||||| ||||| |||||| ||||| |
|
|
| T |
32401811 |
atgtcttttgcaaattccaaaccctttcgcatagttaaggcttctacaacctctgaatctggtaatgaaaagacttgccaagaactaacactaaggacaa |
32401910 |
T |
|
| Q |
207 |
caccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggagg |
306 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
32401911 |
caccttcattatctctcaccacaacaccaataccccacttatcaccctcaatcggacctgctgcgtcaacattaagcttatagaaactactaaaaggagg |
32402010 |
T |
|
| Q |
307 |
tgttcagtgaacatcagatattg |
329 |
Q |
| |
|
|| || ||||||||| |||||| |
|
|
| T |
32402011 |
tg-ccaatgaacatcatatattg |
32402032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 33 - 326
Target Start/End: Original strand, 27214097 - 27214390
Alignment:
| Q |
33 |
aagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatcttt |
132 |
Q |
| |
|
|||||||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||| | || |
|
|
| T |
27214097 |
aagattgttgatgagtattcaacgccaagaccacattagaagcatctgattctgctataagattcataaaacacatgtctttcacaaactccaaaccctt |
27214196 |
T |
|
| Q |
133 |
ccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccaca |
232 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| || | || |||||| ||| || |||||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
27214197 |
ccgcataactaaagcttctgcaacctctgagtctagtcaagaaaagactttccagcagctagcagctacgacaacaccttcattatctcttaccacaaca |
27214296 |
T |
|
| Q |
233 |
ccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagata |
326 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||| | |||||| |||||||| || ||||||||||||| |
|
|
| T |
27214297 |
ccaataccccacttaccctcttctatcggacctgctgcatcaacattaagcttatagaagccactaaaaggaggtgtacaatgaacatcagata |
27214390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 16055203 - 16055037
Alignment:
| Q |
59 |
aaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaa-tctttccgcatatctaaagcttctgcaacc |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||| | | ||||| | |||| |||||| ||||| |||||||||||||||| |
|
|
| T |
16055203 |
aaaaccacattagaagcatctgattctgctataagattcaaaaaagtcatgtttatcgcaaacttcaaactctttc-gcatagttaaagcttctgcaacc |
16055105 |
T |
|
| Q |
158 |
tctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacctt-cattatctctca |
224 |
Q |
| |
|
|||||||||| |||| || |||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
16055104 |
tctgaatctgataatgaaaagacttgccagcaactagcgacaacgacaacaccttccattatctctca |
16055037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 337
Target Start/End: Original strand, 15908092 - 15908390
Alignment:
| Q |
34 |
agattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatg-tcttttgcaaattccaaatcttt |
132 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||| | || |||| || || ||||| |||||| |||| || |
|
|
| T |
15908092 |
agattgttgatgagcattcaacgccaaaaccatgttagaagcatctgattttgctataagttccataaaagacgtgatctttcacaaatttcaaactctt |
15908191 |
T |
|
| Q |
133 |
ccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccaca |
232 |
Q |
| |
|
| ||||| ||||||||| |||||||| |||| |||||||| || ||| ||| ||||||||||| | |||||||||||||||||||||| | ||| |
|
|
| T |
15908192 |
ctgcatagctaaagcttttgcaacctatgaacctggtaatgaaaagatttgtcaacaactagcggcagcgacaacaccttcattatctct----tcaaca |
15908287 |
T |
|
| Q |
233 |
ccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagatattggca |
332 |
Q |
| |
|
||||||||||||||| | || |||||||||| ||| | ||||||||| ||||| ||| | |||| ||||||||||| |||| || ||||||||| |
|
|
| T |
15908288 |
ccaataccccactta-ccccctctatcggacatgcatcatcaacattaaccttat-gaacccggtaaaaggaggtgttcaatgaatatatgatattggcc |
15908385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 4719057 - 4719276
Alignment:
| Q |
23 |
acatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaatt |
122 |
Q |
| |
|
|||||| || |||||||||| ||| ||||||| || || ||||||||||||||||||||||||||||||||||||||| | || ||| || |||| |
|
|
| T |
4719057 |
acataggtggaagattgttgatgaacattcaatctcaatactacattagaagcatctgattctgctataagattcagaaaagagatatctactgttaatt |
4719156 |
T |
|
| Q |
123 |
ccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaat-taacagacttgccaacaactagcactaacgacaacaccttcattatctc |
221 |
Q |
| |
|
|||| | ||| |||| ||||||||||||| | |||| |||||| |||| || | ||||||| |||||||||| || ||||||| |||||||||||| |
|
|
| T |
4719157 |
tcaaaccattctgcatgactaaagcttctgctatctctaaatctgataataaaaaaaacttgccggcaactagcacaaatgacaacatcttcattatctc |
4719256 |
T |
|
| Q |
222 |
tcaccaccacaccaataccc |
241 |
Q |
| |
|
|| |||| |||||||||||| |
|
|
| T |
4719257 |
tcgccacaacaccaataccc |
4719276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 27160836 - 27160717
Alignment:
| Q |
49 |
attcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagct |
148 |
Q |
| |
|
||||||||| |||| || |||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||| | |||| | |||| |||| |||||||| |
|
|
| T |
27160836 |
attcaacgccaaaatcaaattagaagtatctgattctgctataagattcataaaacacatgtttttcgcaaacttcaaacccttccacatagctaaagct |
27160737 |
T |
|
| Q |
149 |
tctgcaacctctgaatctgg |
168 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27160736 |
tctgcaacctctgaatctgg |
27160717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 43462777 - 43462636
Alignment:
| Q |
48 |
cattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagc |
147 |
Q |
| |
|
|||||||||| ||||| |||||| |||||| |||| |||| ||||||||| |||| |||||||| || ||||||||||| ||| |||||| ||||||| |
|
|
| T |
43462777 |
cattcaacgccaaaactacattacaagcatatgataatgctttaagattcataaaagacatgtctcttacaaattccaaactttttcgcatagctaaagc |
43462678 |
T |
|
| Q |
148 |
ttctgcaacctctgaatctggtaattaacagacttgccaacaa |
190 |
Q |
| |
|
| ||||||||||||||||| |||| || ||||||| |||||| |
|
|
| T |
43462677 |
-tatgcaacctctgaatctgataatgaaaagacttgtcaacaa |
43462636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 41 - 337
Target Start/End: Original strand, 9875 - 10170
Alignment:
| Q |
41 |
tggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatat |
140 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||| | ||||||||| |
|
|
| T |
9875 |
tggtgagatttcaacgctaaaaccacattagaagcatctgattctgctataagattcagaatg-acgtgtcttttacgaattccaaacccttccgcatag |
9973 |
T |
|
| Q |
141 |
ctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaatacc |
240 |
Q |
| |
|
||||||||| | | || |||||| ||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
9974 |
ctaaagcttaagtatccgctgaatttggtaataaaaagacttgccaggaactagcaccgacgacaacaccttcattatctctcaccacaacactgatacc |
10073 |
T |
|
| Q |
241 |
ccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
|||||||||||| | |||||||| |||| | ||||||||| ||||||| |||| |||||| ||||||| | |||||||||||||||||| ||||| |
|
|
| T |
10074 |
ccacttatcaccctttatcggacgtgctacatcaacattaagcttataaaaaccactaaaaagaggtgtcaaatgaacatcagatattggctaaatt |
10170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 1661429 - 1661753
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| ||| ||||||| || |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| | |||| | |
|
|
| T |
1661429 |
aatagagcaaacataggtggaagattattgatgagcattcaacgctaagaccacattagaagcatctgattctgctatgagattcaaaaaagagatgtat |
1661528 |
T |
|
| Q |
113 |
tttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacacctt |
212 |
Q |
| |
|
|||||||||| |||| | ||||||||| | || ||||||||||||||||||| ||||||| || ||||| | || ||||||||| || | | ||| || |
|
|
| T |
1661529 |
tttgcaaatttcaaacccttccgcatagccaaggcttctgcaacctctgaatttggtaatgaaaagactagtcagcaactagcagcaagggtatcacttt |
1661628 |
T |
|
| Q |
213 |
cattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttca |
312 |
Q |
| |
|
|||||| ||| || || ||| ||||| |||||||| || | |||||| |||||| ||| ||||||||| ||||||||||| |||||| | | ||| || |
|
|
| T |
1661629 |
cattatttcttactacaacatcaata-cccacttaccatcatctatcagacctgatgcatcaacattaagcttatagaaatcactaaaagaatatgtcca |
1661727 |
T |
|
| Q |
313 |
gtgaacatcagatattggcaaaatta |
338 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
1661728 |
atgaacatcatatattggcaaaatta |
1661753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 9490920 - 9491247
Alignment:
| Q |
7 |
tcgaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatac |
106 |
Q |
| |
|
||||| |||| || |||||||| || ||||||||| ||||||||||||| |||| ||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
9490920 |
tcgaataatagagtcaacatagctgtgagattgttgatgagcattcaacgtcaaaattacactagaagcatatgattctgctatcagattcagaaaatac |
9491019 |
T |
|
| Q |
107 |
atgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaa |
206 |
Q |
| |
|
|| ||||| ||||||| ||| | ||||||||| ||||||||| |||||| ||||||| ||||||| || ||||||| | | ||||| | | |||| |
|
|
| T |
9491020 |
atatctttcgcaaattacaagcccttccgcatagctaaagcttatgcaacttctgaatttggtaatgaaaagacttgttaggacctagc---agcaacaa |
9491116 |
T |
|
| Q |
207 |
caccttcattatctctcaccaccacaccaataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggagg |
306 |
Q |
| |
|
||||| ||| |||||||||||| ||||||| |||||||||||| || |||||||||||| |||| ||||||||| ||||||||||| | |||| | || |
|
|
| T |
9491117 |
cacctacataatctctcaccacaacaccaaaaccccacttatccccctctatcggacctactgcatcaacattaaacttatagaaaccattaaaagatgg |
9491216 |
T |
|
| Q |
307 |
tgttcagtgaacatcagatattggcaaaatt |
337 |
Q |
| |
|
||| || ||||||| |||| ||||||||||| |
|
|
| T |
9491217 |
tgtccaatgaacataagatgttggcaaaatt |
9491247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 61 - 327
Target Start/End: Original strand, 3363000 - 3363265
Alignment:
| Q |
61 |
aaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctct |
160 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| | ||||||||| ||||||||| | | |||||| |
|
|
| T |
3363000 |
aaccacattaaaagcatctgattccgctataagatttagaaaaaacatgtcttttgcaaattccaaccccttccgcatagctaaagctttttctacctct |
3363099 |
T |
|
| Q |
161 |
gaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccacttatcaccttctatcg |
260 |
Q |
| |
|
|||||||||||| || ||||||| || || |||||| |||| |||| |||||||| | |||||| || ||| |||||||||||||| | || ||||| | |
|
|
| T |
3363100 |
gaatctggtaatgaaaagacttgacagcatctagcagtaaccacaataccttcatagtatctcacaacaacatcaataccccactta-ccccctctattg |
3363198 |
T |
|
| Q |
261 |
gacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagatat |
327 |
Q |
| |
|
||| | |||| |||||||| |||||||| ||| | || || ||||| ||||||||||||||||| |
|
|
| T |
3363199 |
gacatactgcatcaacatttagcttatagcaaccattatcggggggtgtccagtgaacatcagatat |
3363265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 19646080 - 19646260
Alignment:
| Q |
67 |
attagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatct |
166 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |||| |||||||||| ||||||||||| ||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
19646080 |
attataagcatttgattctgctataagattcacaaaagacatgtctttcaaaaattccaaattcttccgtatagctaaatcttctgcaacctctgaatct |
19646179 |
T |
|
| Q |
167 |
ggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaataccccactta |
247 |
Q |
| |
|
||||| || | ||||| || |||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
19646180 |
ggtaagaaaaaaacttgtcagtaactagcagcaatgacaacaccttcattatctctcaccacaacaccaatatcccactta |
19646260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 334
Target Start/End: Original strand, 19624907 - 19625203
Alignment:
| Q |
39 |
gttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcat |
138 |
Q |
| |
|
|||| |||||||||||| | || || || ||||| || | |||||||| |||||||||||||||| |||||||||| ||||| ||| ||| |||| |
|
|
| T |
19624907 |
gttgatgagcattcaacaccaagactaccttagatgcttttgattctgttataagattcagaaaagacatgtctttcaaaaatttgaaactcttctgcat |
19625006 |
T |
|
| Q |
139 |
atctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttcattatctctcaccaccacaccaata |
238 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||| || | ||| |||||| | || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19625007 |
agctaaatcttctgcaacctctgaatctgataatgaaaaattttgttggtaactagtagcaatgacaacaccttcattatctctcaccaaaacaccaata |
19625106 |
T |
|
| Q |
239 |
ccccacttatc-accttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagatattggcaaa |
334 |
Q |
| |
|
|||||||| | ||| |||||||||||| |||| || |||||| | ||| |||||| |||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
19625107 |
tcccacttacccaccctctatcggaccttctgcatcgacattaagtttacagaaaccactaaaaagaggtgtccaatgaacatcagatattggcaaa |
19625203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 28388792 - 28388632
Alignment:
| Q |
36 |
attgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccg |
135 |
Q |
| |
|
|||||||| ||||||| ||| | || |||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| | ||||| |
|
|
| T |
28388792 |
attgttggagagcatttaacaccaagaccatattagaagcatttgattctgctataagattcagaaaagacatgtctttcataaattccaaaaccttccg |
28388693 |
T |
|
| Q |
136 |
catatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagca |
196 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||| |||| || |||||||| ||||| ||||| |
|
|
| T |
28388692 |
catagctaaggcttctgcaacctttgaatctgataataaaaagacttgcaaacaattagca |
28388632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 61 - 298
Target Start/End: Complemental strand, 8085970 - 8085729
Alignment:
| Q |
61 |
aaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctct |
160 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||| | |||||||||||||||| ||| | ||||||||| ||||| ||| | |||||| |
|
|
| T |
8085970 |
aaccacattagaaacatctgattctattataagattcaaaaaagatatgtcttttgcaaatttcaaccccttccgcatagctaaaacttttcttacctct |
8085871 |
T |
|
| Q |
161 |
gaatctggtaattaacagacttgccaacaactagcactaacgacaacaccttc----attatctctcaccaccacaccaataccccacttatcaccttct |
256 |
Q |
| |
|
||||| ||||| || ||||||| || ||||||| | ||| ||||||||||| || ||||||||| || ||| ||| |||||| ||| | || ||| |
|
|
| T |
8085870 |
aaatctagtaatcaaaagacttgacatcaactaggagcaacaacaacaccttcatatataatctctcacaacaacatcaacaccccatttacccccctct |
8085771 |
T |
|
| Q |
257 |
atcggacctgctgcgtcaacattatgcttatagaaacaacta |
298 |
Q |
| |
|
|| |||||||||| |||||||| |||||||| ||| |||| |
|
|
| T |
8085770 |
attagacctgctgcatcaacatttagcttatagcaaccacta |
8085729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 26832489 - 26832387
Alignment:
| Q |
61 |
aaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctct |
160 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||| ||| |||||||| ||||| |||| || ||||||| |||||||| ||| |||||| |
|
|
| T |
26832489 |
aaccacattagaagcatctgattcctttaaaagattca-taaagacacgtcttttgaaaatttcaaactcttacgcatatataaagcttatgctacctct |
26832391 |
T |
|
| Q |
161 |
gaat |
164 |
Q |
| |
|
|||| |
|
|
| T |
26832390 |
gaat |
26832387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 46865851 - 46865790
Alignment:
| Q |
49 |
attcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgt |
110 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||| ||||||| ||||||||||| ||||| |
|
|
| T |
46865851 |
attcaacgcctaaaccacattagaaacatcaaattccgctataaaattcagaaaatgcatgt |
46865790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 41207972 - 41207873
Alignment:
| Q |
66 |
cattagaagcatctgattctgctataagatt--cagaaaatacatgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaa |
163 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| | |||| |||||||||| ||||||| ||| |||||||||| |||||| |||||| |||||||| |
|
|
| T |
41207972 |
cattagaagcatcagattccgttataagattaaaaaaaaacacatgtctttagcaaatttcaaccctttccgcattgctaaagtttctgctgcctctgaa |
41207873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 44678 - 44906
Alignment:
| Q |
7 |
tcgaagaatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatac |
106 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||||| |||||| |||| | |||||||||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
44678 |
tcgaataatata-ccaacatagttggaagattgtttacgagcat-caacaccaaaaccacattagaagcatctgattca-ctataagattcataaaagcc |
44774 |
T |
|
| Q |
107 |
atgtcttttgcaaattccaaatctttccgcatatctaaagcttctgcaacctctgaatctggtaattaacagacttgccaacaactagcactaacgacaa |
206 |
Q |
| |
|
|| ||||| ||||||| |||| | ||| |||| || |||||||||||||||||||||||||||| || ||||||| | |||||| | || ||||| |
|
|
| T |
44775 |
atctctttcgcaaatttcaaacccttctacatagttagagcttctgcaacctctgaatctggtaatgaaaagacttgttaggaactag-agcaatgacaa |
44873 |
T |
|
| Q |
207 |
caccttcattatctctcaccaccacaccaatac |
239 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| |
|
|
| T |
44874 |
catcttcattatctctcaccacaacaccaatac |
44906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0578 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 4180 - 4073
Alignment:
| Q |
13 |
aatatagccaacatagttgaaagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtct |
112 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| | ||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
4180 |
aatagagccaacatagttgagagattgttggtggggattcaacgctagaaccacatttgaaccatctaattctgctataagattcagaaaagacatgtct |
4081 |
T |
|
| Q |
113 |
tttgcaaa |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
4080 |
tttgcaaa |
4073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 30270495 - 30270402
Alignment:
| Q |
235 |
aataccccacttatcaccttctatcggacctgctgcgtcaacattatgcttatagaaacaactaaacggaggtgttcagtgaacatcagatatt |
328 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||| | ||||||| |||||||||||| |||||| | ||||| || ||||| ||||||||| |
|
|
| T |
30270495 |
aataccccacttatcaccctctatcggactcgttgcataaacattaagcttatagaaaccactaaaatggggtgtccaatgaacttcagatatt |
30270402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 17518821 - 17518946
Alignment:
| Q |
33 |
aagattgttggtgagcattcaacgctaaaaccacattagaagcatctgattctgctataagattcagaaaatacatgtcttttgcaaattccaaatcttt |
132 |
Q |
| |
|
|||||||||| |||| |||||||| || |||||||||||| ||| |||||||||||||| || || |||||||| ||||| |||||||| || |
|
|
| T |
17518821 |
aagattgttgatgagtattcaacgtcaagaccacattagaatcatttgattctgctataa-----agcaa----atgtctttcgcaaactccaaatcctt |
17518911 |
T |
|
| Q |
133 |
ccgcatatctaaagcttctgcaacctctgaatctg |
167 |
Q |
| |
|
|| | | ||||| ||||||||||||||||||||| |
|
|
| T |
17518912 |
ccatacagctaaaacttctgcaacctctgaatctg |
17518946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 34182328 - 34182361
Alignment:
| Q |
59 |
aaaaccacattagaagcatctgattctgctataa |
92 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
34182328 |
aaaaccacattagaagcatctgattctcctataa |
34182361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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